View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14808_high_8 (Length: 357)
Name: NF14808_high_8
Description: NF14808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14808_high_8 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 6 - 337
Target Start/End: Complemental strand, 7561613 - 7561282
Alignment:
| Q |
6 |
atatagaatggaacatacaca--gagttatgaagtacaatttgaaataatttaaactgtgtaaataatatattgatatcaaacccttcaagaaaaaccct |
103 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |
|
|
| T |
7561613 |
atatagaatggaacatacacaaagagttatgaagtacaatttgaaataatttaaactgtgtaaatagtatattgatatcaaacccttcaagaaaaaccat |
7561514 |
T |
|
| Q |
104 |
tatacatacnnnnnnnntaagaatgaaagataaacttgatgcctaacaactacaaaccagaaattaatttaacaactttaatatcaaccactaggagtac |
203 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
7561513 |
tatacatacaaaaaaa-taagaatgaaagataaacttgatgcctaacaactacaaaccagaaattaatttaacaactttaatatcaaccactaggagttc |
7561415 |
T |
|
| Q |
204 |
tatgtttgaaaaactgacccactccatgtttgcaaatcagtgttgttaaatggaggccaagacgccgcaatggtggatgctgtggcggattttttgacaa |
303 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |
|
|
| T |
7561414 |
tatgtttgaaaaactgacccactccatgtttgcaaatcagtgttgttaaatggaggccaagacgccgcaatggtggacgctgtggcggat-ttttgacaa |
7561316 |
T |
|
| Q |
304 |
cagccatatggattttgttaagggatgtgcggcg |
337 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
7561315 |
cagccatatggattttgttaagggatgtgcggcg |
7561282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University