View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14808_low_1 (Length: 597)
Name: NF14808_low_1
Description: NF14808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14808_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 374; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 20 - 536
Target Start/End: Complemental strand, 4247185 - 4246698
Alignment:
| Q |
20 |
atatacactctctcatctcagatatccaaatatcaacttgaatatcatccaagagcaatattgaacattttcacacaaaaaacaaacaaaatacatttct |
119 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4247185 |
atatacactctctcatctcagatatccatatatcaacttgaatatcatccaagagcaatattgaacattttcacacaaaaaacaaacaaaatacatttct |
4247086 |
T |
|
| Q |
120 |
ttctcacccatgacaatgacataccactttactcaaagaaatactttgctaggatttgtttggtatgagtccagttaaactcaagattcaagcaactact |
219 |
Q |
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| T |
4247085 |
ttctcacccatgaca------taccactttactcaaagaaatactttgctaggatttgtttggtatgagtccagttaaactcaagattcaagcaactact |
4246992 |
T |
|
| Q |
220 |
ccaatccaaaacacttctcctcaaaaggatagttcaaaatgctgaagcaaaaccacactattttgtaaaaaattactctggtttcgttatttcacttaga |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |
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| T |
4246991 |
ccaatccaaaacacttctcctcaaaaggatagttcaaaatgctgaagcaaaaccacactatcttgtaaaaaattactctggtttcattatttcacttaga |
4246892 |
T |
|
| Q |
320 |
catgtgaccagactttaatagacattacctatcctttttaatacatatctttcaaattgattttatcatttgcttagctagtgtgggtgnnnnnnntaat |
419 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |
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| T |
4246891 |
catgtgaccagactttaatagacattacctatcctttttaatacatatctttcaaattgatcttatcatttgcttagctagtgtgggtgaaaaaaataat |
4246792 |
T |
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| Q |
420 |
cataaatacattcgatgagtcttaccaaaccaagtgaacagaaattacatgctatttaattttatccatattaacataaaatatttatatgatcaccaat |
519 |
Q |
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| T |
4246791 |
cataaatacattcgataagtcttaccaaaccaag----------------------taattttatccatattaacat-aaatatttatatgatcaccaat |
4246715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 546 - 591
Target Start/End: Complemental strand, 4246311 - 4246266
Alignment:
| Q |
546 |
actaaacaaataaaatgtcaaagtgcttttttgcatgttacctatg |
591 |
Q |
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| T |
4246311 |
actaaacaaataaaatgtcaaagtgcttttttgcatgttacctatg |
4246266 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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