View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14808_low_12 (Length: 338)
Name: NF14808_low_12
Description: NF14808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14808_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 151; Significance: 7e-80; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 119 - 297
Target Start/End: Complemental strand, 51535166 - 51534988
Alignment:
| Q |
119 |
tgacgcagagaagtgattctaggtcaaaaattatttaaaatcatccctgtttaatgattgaaagaaaaagagaacttagagagaatgccaattacataag |
218 |
Q |
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| T |
51535166 |
tgacgcagagaggtgattctaggtcaaaaattatttaaaaccatccctctttgatgattgaaagagaaagagaacttagagagaatgccaagtacataag |
51535067 |
T |
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| Q |
219 |
taaattctaactttttagaaatatacataaagtccttgtcaataatttttcaaagcctatttaagtgattcaaaaagtg |
297 |
Q |
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| T |
51535066 |
taaattctaactttttagaaatatacataaagtccttgtcaataatttttcaaagtctatttaagtgattcaaaaagtg |
51534988 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 51535283 - 51535238
Alignment:
| Q |
1 |
atcaaacaacgccgcacaagacggcgcactcagatgacgaaatcac |
46 |
Q |
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| T |
51535283 |
atcaaacaacgccgtacaagacggcacactcagatgacaaaatcac |
51535238 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 123 - 201
Target Start/End: Complemental strand, 31296696 - 31296617
Alignment:
| Q |
123 |
gcagagaagtgattctaggtcaaaaattatttaaaatcatccc-tgtttaatgattgaaagaaaaagagaacttagagag |
201 |
Q |
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| T |
31296696 |
gcagagagatgattataggtcaaaaatgacataaaatcatcccatttttaatgaatgaaacaaaaagaaaacttagagag |
31296617 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 203
Target Start/End: Original strand, 5078604 - 5078677
Alignment:
| Q |
131 |
gtgattctaggtcaaaaatt-atttaaaatcatccctgtttaatgattgaaagaaaaagagaacttagagagaa |
203 |
Q |
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| T |
5078604 |
gtgattctaggtcaaaaaatgacctaaaatcacccttccttaatgagtgaaagataaagagaacttagagagaa |
5078677 |
T |
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