View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14808_low_17 (Length: 285)
Name: NF14808_low_17
Description: NF14808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14808_low_17 |
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Alignment Details
Target: chr6 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 15 - 270
Target Start/End: Original strand, 12880842 - 12881090
Alignment:
| Q |
15 |
aacaaaggggtagcaatggatcggaaacaaacaattctgttgaagaaatcaatgcggaactccattggctgtaccttttgaaactatcaatcaaaagact |
114 |
Q |
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| T |
12880842 |
aacaaagggatagcaatggatcggaaacaaacaattctgttgaagaaatcaatacggaactccattggctgtaccttttgaagctatcaatcaaaagact |
12880941 |
T |
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| Q |
115 |
tttaatgctggtgattcttctgagcagttcacggctgatgcaggccctaagaccatagctattcagtctcccatctaaccaaccggcaaaagaaccaaaa |
214 |
Q |
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| T |
12880942 |
tttaatgctggtgattcttctgagcagttcacggctgat-------ctaagaccatagctattcagtctcccatccaaccaaccggcaaaagaaccaaaa |
12881034 |
T |
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| Q |
215 |
actgctcattgggtgatttgtcagtggttctcgtactatgaatataccccaacaat |
270 |
Q |
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| T |
12881035 |
actgctcattgggtgatttgtcagtggttctcgtactatgaatataccccatcaat |
12881090 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 117 - 212
Target Start/End: Original strand, 6349131 - 6349226
Alignment:
| Q |
117 |
taatgctggtgattcttctgagcagttcacggctgatgcaggccctaagaccatagctattcagtctcccatctaaccaaccggcaaaagaaccaa |
212 |
Q |
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| T |
6349131 |
taatggtggtgattctcctgagcagttcacggatgatgcagtccctaagaccacagctattcagtctcccttcataccaactggaaaaagaaccaa |
6349226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 70 - 127
Target Start/End: Original strand, 6359231 - 6359288
Alignment:
| Q |
70 |
ggaactccattggctgtaccttttgaaactatcaatcaaaagacttttaatgctggtg |
127 |
Q |
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| T |
6359231 |
ggaacaccattagctgtacctgttgaaactaccaatgaaaagacttttaatgctggtg |
6359288 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 61
Target Start/End: Original strand, 6349071 - 6349116
Alignment:
| Q |
16 |
acaaaggggtagcaatggatcggaaacaaacaattctgttgaagaa |
61 |
Q |
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| T |
6349071 |
acaagggggtagcaatgcatcggaaacaaacaattctattgaagaa |
6349116 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 125
Target Start/End: Original strand, 6372674 - 6372728
Alignment:
| Q |
71 |
gaactccattggctgtaccttttgaaactatcaatcaaaagacttttaatgctgg |
125 |
Q |
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| T |
6372674 |
gaacaccatttgctgtaccttttgaaactaccaacggaaagacttttaatgctgg |
6372728 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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