View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14808_low_20 (Length: 237)
Name: NF14808_low_20
Description: NF14808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14808_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 139; Significance: 7e-73; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 62 - 221
Target Start/End: Complemental strand, 2790326 - 2790165
Alignment:
| Q |
62 |
gacgctggcactgtgatatgattgcaagaaaattagtacttatttttaatatatgcaatggacaga--gtaaacatttcactcaacctacatacttcaac |
159 |
Q |
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| T |
2790326 |
gacgctggcactgtgatatgattgcaagaaaatttgtacttatttttaatatatgcaatggacagaaagtaaacatttcactcaacctacatacttcaac |
2790227 |
T |
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| Q |
160 |
tctacctatgcagtattcaaacatatatttgaagatataaacagcaagcagcatctagttaa |
221 |
Q |
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| T |
2790226 |
tctacctgtgcagtattcaaacagatatttgaagatataaacagcaagcagcatctagttaa |
2790165 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 62 - 221
Target Start/End: Original strand, 2403278 - 2403439
Alignment:
| Q |
62 |
gacgctggcactgtgatatgattgcaagaaaattagtacttatttttaatatatgcaatggacagag--taaacatttcactcaacctacatacttcaac |
159 |
Q |
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||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |
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| T |
2403278 |
gacgctggcactgtgatatgattgcaagagaatctgtacttatttttaatatatgcaatggatagagagtaaacatttcactcaacctacatacttcaac |
2403377 |
T |
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| Q |
160 |
tctacctatgcagtattcaaacatatatttgaagatataaacagcaagcagcatctagttaa |
221 |
Q |
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| T |
2403378 |
tctacctatgcagtattcaaacatatatttgaagatataaacaacaagcagcatctagttaa |
2403439 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 2790387 - 2790348
Alignment:
| Q |
1 |
tcagttaaattcacagaaacataagatcaagacattagcc |
40 |
Q |
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| T |
2790387 |
tcagttaaattcacagaaacataagatcaagacattagcc |
2790348 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 2403217 - 2403256
Alignment:
| Q |
1 |
tcagttaaattcacagaaacataagatcaagacattagcc |
40 |
Q |
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| T |
2403217 |
tcagttaaattcacagaaacataggatgaagacattagcc |
2403256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 196
Target Start/End: Complemental strand, 4245498 - 4245436
Alignment:
| Q |
134 |
atttcactcaacctacatacttcaactctacctatgcagtattcaaacatatatttgaagata |
196 |
Q |
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|||| ||||||| ||||||||||| |||||||||||| ||| |||||| |||||| |||||| |
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| T |
4245498 |
atttaactcaactaacatacttcaaatctacctatgcaatatgcaaacagatatttaaagata |
4245436 |
T |
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