View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14808_low_25 (Length: 225)
Name: NF14808_low_25
Description: NF14808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14808_low_25 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 143; Significance: 3e-75; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 57 - 225
Target Start/End: Complemental strand, 7561799 - 7561634
Alignment:
| Q |
57 |
ggctttattttcaatgagatgaaatgtaataattctgtactggtttttcacaagaacagctcattttgtctaataatttctggaaacttacatgattata |
156 |
Q |
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| T |
7561799 |
ggctttattttcaatgagatgaaatgtaat---tctgtactggtttttcacaagaacaactcattttgtctaataatttctggaaacttacatgattata |
7561703 |
T |
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| Q |
157 |
cacaataattcttaacttaaaaaacaaaagatgataatgaatcaagctaaaatcaaataccacacaatc |
225 |
Q |
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| T |
7561702 |
cacaagaattcttaacttaaaaaacaaaagatgataatgaatcgagctaaaatcaaataccacacaatc |
7561634 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 48
Target Start/End: Complemental strand, 7561876 - 7561832
Alignment:
| Q |
4 |
cctgaaataggaaaaccaaccaaaacttacacacaaattttagct |
48 |
Q |
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| T |
7561876 |
cctgaaataggaataccaaccaaaacttacacacaaattttagct |
7561832 |
T |
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