View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14808_low_3 (Length: 498)
Name: NF14808_low_3
Description: NF14808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14808_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 458; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 18 - 487
Target Start/End: Original strand, 34658251 - 34658720
Alignment:
| Q |
18 |
gtaccaaccaaaatacacttattggaataattgcttttggatcatccaataagttatacttagcagcaacttcttttcttttgatttcaactggtgctga |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34658251 |
gtaccaaccaaaatacacttattggaataattgcttttggatcatccaataagttatacttagcagcaacttcttttcttttgatttcaactggtgctga |
34658350 |
T |
|
| Q |
118 |
gattaatgtggctataatgttgattataaatccaattcccattctttgtatgcacgtgattccaaccggattatttgtgaatttacggacgattgggacg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
34658351 |
gattaatgtggctataatgttgattataaatccaattcccattctttgtatgcacgtgattccaaccggattatttgtgaatttacggacgattgggatg |
34658450 |
T |
|
| Q |
218 |
aatacgcgttcataaagaattactcctgccatcatggttacaacactgaaaactgacatgttggctggtgaaatttgaaatgtgggagagaggtgacggt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
34658451 |
aatacgcgttcataaagaattactcctgccatcatggttacaacactgaaaactgacatgttggctggtgaaatttgaaatgtgtgagagaggtgacggt |
34658550 |
T |
|
| Q |
318 |
ccattgttcgagcttgttcgatgacgaaactaggaaggtgtgctgacgcagctataagtaaaattcctgatgctgaaattggaaggattctgatgatgga |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34658551 |
ccattgttcgagcttgttcgatgacgaaactaggaaggtgtgctgaggcagctataagtaaaattcctgatgctgaaattggaaggattctgatgatgga |
34658650 |
T |
|
| Q |
418 |
ttttaactcctcaactctatggacagtggctaatttccaaaagtttgatggtgcatttggttctgtgctc |
487 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34658651 |
ttttaactcctcaactctatggacagtggctaatttccaaaagtttgatggtgcatttggttctgtgctc |
34658720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 18 - 464
Target Start/End: Original strand, 34664924 - 34665370
Alignment:
| Q |
18 |
gtaccaaccaaaatacacttattggaataattgcttttggatcatccaataagttatacttagcagcaacttcttttcttttgatttcaactggtgctga |
117 |
Q |
| |
|
||||||||||||| |||||||| || ||||||||||||||| ||| ||||||| || || | |||||||| ||||||||||||||| || |||||| |
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| T |
34664924 |
gtaccaaccaaaacacacttatagggataattgcttttggactatctaataagtggtatttggaagcaactttttttcttttgatttccaccaatgctga |
34665023 |
T |
|
| Q |
118 |
gattaatgtggctataatgttgattataaatccaattcccattctttgtatgcacgtgattccaaccggattatttgtgaatttacggacgattgggacg |
217 |
Q |
| |
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| || |||||||||||||| || | ||| || |||||||||||||| | || ||||||||| | ||||| ||||||||| |||||| || ||| ||| |
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| T |
34665024 |
aactatagtggctataatgttaatcacaaagcctattcccattctttgcaaacatgtgattccagcaggattctttgtgaatctacggatgaatggaacg |
34665123 |
T |
|
| Q |
218 |
aatacgcgttcataaagaattactcctgccatcatggttacaacactgaaaactgacatgttggctggtgaaatttgaaatgtgggagagaggtgacggt |
317 |
Q |
| |
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|||| |||||| || ||||| || |||| ||||||||||| || ||||||| || ||| |||| |||||||||| |||||| ||||||||||||| | |
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| T |
34665124 |
aataagcgttcgtatagaataacacctgtcatcatggttagcacgctgaaaattgccatactggccggtgaaatttcgaatgtgtgagagaggtgacgat |
34665223 |
T |
|
| Q |
318 |
ccattgttcgagcttgttcgatgacgaaactaggaaggtgtgctgacgcagctataagtaaaattcctgatgctgaaattggaaggattctgatgatgga |
417 |
Q |
| |
|
||||||| ||||||||| | || || |||||| | | || ||| |||| ||| |||| |||||||||||| |||||||||| ||||| | | | | |
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| T |
34665224 |
ccattgtacgagcttgtacaatcacaaaactatgttgagatgatgatgcagttatgagtagaattcctgatgcccaaattggaagcattctaaccaggca |
34665323 |
T |
|
| Q |
418 |
ttttaactcctcaactctatggacagtggctaatttccaaaagtttg |
464 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| ||||| ||||||| |
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|
| T |
34665324 |
ttttaactcttcaactctatggacagtggctaagttccataagtttg |
34665370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 18 - 476
Target Start/End: Original strand, 34645224 - 34645682
Alignment:
| Q |
18 |
gtaccaaccaaaatacacttattggaataattgcttttggatcatccaataagttatacttagcagcaacttcttttcttttgatttcaactggtgctga |
117 |
Q |
| |
|
|||| |||||||||||||| | || || ||||||||||||||||||||||||||| |||| ||||||||| ||||||||| |||| ||| ||||||| |
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|
| T |
34645224 |
gtactaaccaaaatacactaaaagggattattgcttttggatcatccaataagttaaactttgcagcaactgtttttcttttcgtttccactagtgctga |
34645323 |
T |
|
| Q |
118 |
gattaatgtggctataatgttgattataaatccaattcccattctttgtatgcacgtgattccaaccggattatttgtgaatttacggacgattgggacg |
217 |
Q |
| |
|
| || || ||||||||||| | | ||| || | |||||||||||||| || ||||||||| | ||||| ||||||||| ||||| ||| ||| ||| |
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| T |
34645324 |
aactatagtagctataatgttaaccacaaaccctactcccattctttgtaaacatgtgattccagcaggattctttgtgaatctacgggcgaatggaacg |
34645423 |
T |
|
| Q |
218 |
aatacgcgttcataaagaattactcctgccatcatggttacaacactgaaaactgacatgttggctggtgaaatttgaaatgtgggagagaggtgacggt |
317 |
Q |
| |
|
|| | ||||||||| || || |||||| ||||||||||| |||| |||| |||||| |||||||||| |||||| |||| ||| ||||||||||| |
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|
| T |
34645424 |
aaaaagcgttcatatagcataactcctatcatcatggttaggacaccaaaaattgacatattggctggtgcaatttggaatgaatgagtgaggtgacggt |
34645523 |
T |
|
| Q |
318 |
ccattgttcgagcttgttcgatgacgaaactaggaaggtgtgctgacgcagctataagtaaaattcctgatgctgaaattggaaggattctgatgatgga |
417 |
Q |
| |
|
|||| | |||||||||| ||||| |||||| | |||| ||| | ||| || ||||||||||| || |||||||||| ||||||||||| | |
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| T |
34645524 |
ccatcgaacgagcttgttgaatgacaaaactacctaaatgtgatgaagacattatgagcaaaattcctgaagcccaaattggaagcattctgatgatagc |
34645623 |
T |
|
| Q |
418 |
ttttaactcctcaactctatggacagtggctaatttccaaaagtttgatggtgcatttg |
476 |
Q |
| |
|
||| | ||||||||||||||||||||| |||| ||||||| ||||| ||||||||||| |
|
|
| T |
34645624 |
tttcagttcctcaactctatggacagtgactaaattccaaaggtttggtggtgcatttg |
34645682 |
T |
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