View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14809_high_12 (Length: 272)
Name: NF14809_high_12
Description: NF14809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14809_high_12 |
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| [»] chr4 (1 HSPs) |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 19 - 272
Target Start/End: Complemental strand, 644650 - 644399
Alignment:
| Q |
19 |
gtttgctatgaagtttgaattgtgaatttctctaatgtttttggttttcagatttacttctatgagaaattacttttgttctcttttttaacgtaattgt |
118 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
644650 |
gtttgctatgaagtttgaattgtgaatttct--aatgtttttggttttcagatttacttctatgagaaattacttttgttctcttttttaacgtaattgt |
644553 |
T |
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| Q |
119 |
atatatgctcatcatgttatgtgtgcatgacaaatgaataagttattaatatataatgcaagctattgattgtggagtgcattgcattgctttttgtcgc |
218 |
Q |
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| T |
644552 |
atatatgctcatcatgttatgtgtgcatgacaaatgaataagttattaatatataatgcaagctattgattgtggagtgcattgcattgcttgttgtcgc |
644453 |
T |
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| Q |
219 |
tttgacatgacttatatttcttgaacaaaatcttgtttccttcttatttaagtt |
272 |
Q |
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| T |
644452 |
tttgccatgacttatattacttgaacaaattcttgtttcctacttatttaagtt |
644399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 143; Significance: 3e-75; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 22 - 272
Target Start/End: Original strand, 31340055 - 31340291
Alignment:
| Q |
22 |
tgctatgaagtttgaattgtgaatttctctaatgtttttggttttcagatttacttctatgagaaattacttttgttctcttttttaacgtaattgtata |
121 |
Q |
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| T |
31340055 |
tgctatgaagtttgaattgtgaatttat--aatgttttttgttttcagatttacttctatgagaaattacttttgttttctttctgaacgtaattgtata |
31340152 |
T |
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| Q |
122 |
tatgctcatcatgttatgtgtgcatgacaaatgaataagttattaatatataatgcaagctattgattgtggagtgcattgcattgctttttgtcgcttt |
221 |
Q |
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| T |
31340153 |
tatgctcatcatgttatgtgtgcatgacaaatgaataagttatt------------aagctattgattgtggagtgcattgcattgcttgtcgtcgcttt |
31340240 |
T |
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| Q |
222 |
gacatgacttatatttcttgaacaaaatcttgtttccttcttatttaagtt |
272 |
Q |
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| T |
31340241 |
gccatgacttatattacttgaacaaattcttatgtcctacttattgaagtt |
31340291 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 22 - 272
Target Start/End: Original strand, 31333325 - 31333561
Alignment:
| Q |
22 |
tgctatgaagtttgaattgtgaatttctctaatgtttttggttttcagatttacttctatgagaaattacttttgttctcttttttaacgtaattgtata |
121 |
Q |
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| T |
31333325 |
tgctatgaagtttgaattgtgaatttat--aatgttttttgttttcagatttacttctatgagaaattacttttgttttctttctgaacgtaattgtata |
31333422 |
T |
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| Q |
122 |
tatgctcatcatgttatgtgtgcatgacaaatgaataagttattaatatataatgcaagctattgattgtggagtgcattgcattgctttttgtcgcttt |
221 |
Q |
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| T |
31333423 |
tatgctcatcatgttatgtgagcatgacaaatgaataagttatt------------aagctattgattgtggagtgcattgcattgcttgtcgtcgcttt |
31333510 |
T |
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| Q |
222 |
gacatgacttatatttcttgaacaaaatcttgtttccttcttatttaagtt |
272 |
Q |
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| T |
31333511 |
gccatgacttatattacttgaacaaattcttatgtcctacttattgaagtt |
31333561 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 116; Significance: 4e-59; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 19 - 210
Target Start/End: Complemental strand, 1657058 - 1656881
Alignment:
| Q |
19 |
gtttgctatgaagtttgaattgtgaatttctctaatgtttttggttttcagatttacttctatgagaaattacttttgttctcttttttaacgtaattgt |
118 |
Q |
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||||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||| |
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| T |
1657058 |
gtttgctatgaagtttgaattgtgaatttat--aatgttttttgttttcagatttacttctatgagaaattacttttgttttctttctgaacgtaattgt |
1656961 |
T |
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| Q |
119 |
atatatgctcatcatgttatgtgtgcatgacaaatgaataagttattaatatataatgcaagctattgattgtggagtgcattgcattgctt |
210 |
Q |
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| T |
1656960 |
atatatgctcatcatgttatgtgcgcatgacaaatgaataagttatt------------aagctattgattgtggagtgcattgcattgctt |
1656881 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 19 - 90
Target Start/End: Original strand, 28246585 - 28246654
Alignment:
| Q |
19 |
gtttgctatgaagtttgaattgtgaatttctctaatgtttttggttttcagatttacttctatgagaaatta |
90 |
Q |
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| T |
28246585 |
gtttgctatgaagtttgaattgtgaatttat--aatgttttttgttttcagatttacttctatgagaaatta |
28246654 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 47
Target Start/End: Original strand, 11936567 - 11936595
Alignment:
| Q |
19 |
gtttgctatgaagtttgaattgtgaattt |
47 |
Q |
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| T |
11936567 |
gtttgctatgaagtttgaattgtgaattt |
11936595 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 47
Target Start/End: Original strand, 11948547 - 11948575
Alignment:
| Q |
19 |
gtttgctatgaagtttgaattgtgaattt |
47 |
Q |
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| T |
11948547 |
gtttgctatgaagtttgaattgtgaattt |
11948575 |
T |
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