View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14809_high_16 (Length: 239)
Name: NF14809_high_16
Description: NF14809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14809_high_16 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 24877075 - 24876822
Alignment:
| Q |
1 |
tcactttaaaccctgagttagttgttaatggaccaagttgatataaggagtgacaacactttctttttaatactcaatataaccgtcactctcttattga |
100 |
Q |
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| T |
24877075 |
tcactttaaaccctgagttagttgttaatggaccaagttgatataaggagtgacaacactttctttttaatactcaatataaccgtcactctcttattga |
24876976 |
T |
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| Q |
101 |
gttaaattcatgtaaatctcatcactttatgtatgacatatt---------------tcacataagtttcactcaataagagaccgagtgttttagtgcg |
185 |
Q |
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| T |
24876975 |
gttaaattcatgtagatctcatcactttatgtataacatatttttaaagtaaagatcttacataagtttcacttaataagagaccgagttttttagtgcg |
24876876 |
T |
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| Q |
186 |
tattgaaagagaatgttgttatcacttctcaattgatattatattggagtataa |
239 |
Q |
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| T |
24876875 |
tattgaaagagaatgttgttatcacttctcaattgatattatatcggagtataa |
24876822 |
T |
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Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 86 - 136
Target Start/End: Complemental strand, 35920017 - 35919967
Alignment:
| Q |
86 |
tcactctcttattgagttaaattcatgtaaatctcatcactttatgtatga |
136 |
Q |
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| T |
35920017 |
tcactcttttattgagtaaaattcatataaatctcgtcactttatgtatga |
35919967 |
T |
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