View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14809_high_2 (Length: 420)
Name: NF14809_high_2
Description: NF14809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14809_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 16 - 377
Target Start/End: Complemental strand, 1960637 - 1960276
Alignment:
| Q |
16 |
cattttgtaagaagaaaataaatnnnnnnngcttagctgcatacatgcaaccatctttccattgtttgtaaattcttaaatgcttcggctttaaaaacca |
115 |
Q |
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| T |
1960637 |
cattttgtaagaagaaaataaataaataaagcttagctgcatatatgcaaccatctttccattgtttgtaaattcttagatgcttcggctttaaaaacca |
1960538 |
T |
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| Q |
116 |
gtcttatctgctatcggtgtcaattgtatgaaaatatcatcacacttttgcgaaaattgttcataactaaaccatagtcttttccactatccctgtttat |
215 |
Q |
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| T |
1960537 |
gtcttatctgctatcggtgtcaattgtatgaaaatatcatcacacttttgcgaaaattgttcataactaaaccatagtcttttccactatccctgtttat |
1960438 |
T |
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| Q |
216 |
tgtatggaaatcatcatacttttctttatgttgttagtaatgtaaaaatatcagaaaacatgaaaacagtgatttattatatgcaatggaaacaagatga |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
1960437 |
tgtatggaaatcatcatacttttctttatgttgttagtaatgtaaaaatatcagaaaacatgaaaacagtgatttgttatatgcaatggaaacaagatga |
1960338 |
T |
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| Q |
316 |
acagacagacaaatacataagttatcaaataaagttaagaataatatcaaaccaacctgata |
377 |
Q |
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| T |
1960337 |
acagacagacaaatacataagttatcaaataaagttaagaataatatcaaaccaacctgata |
1960276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 46 - 237
Target Start/End: Complemental strand, 5897338 - 5897143
Alignment:
| Q |
46 |
gcttagctgcatacatgcaaccatctttccattgtttgtaaattcttaaa-tg-------cttcggctttaaaaaccagtcttatctgctatcggtgtca |
137 |
Q |
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| T |
5897338 |
gcttagctgcatacatacaaccataggtccattgtttgtaaattcctaaaatgtaaacaacttcagctctaaaaaccagtcttatctgctatcagtgtct |
5897239 |
T |
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| Q |
138 |
attgtatgaaaatatcatcacacttttgcgaaaattgttcataactaaaccatagtcttttccactatccctgtttattgtatggaaatcatcatacttt |
237 |
Q |
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||| |||| |||| |||| ||||| | | || |||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||| |||| |
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| T |
5897238 |
attatatggaaat--catcgcacttgtat--atgttcttcataactaaaccatagtcttatccactatcggtgtctattgtatggaaatcatcatgcttt |
5897143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 322 - 355
Target Start/End: Complemental strand, 5897063 - 5897030
Alignment:
| Q |
322 |
agacaaatacataagttatcaaataaagttaaga |
355 |
Q |
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| T |
5897063 |
agacaaatacataagctatcaaataaagttaaga |
5897030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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