View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14809_high_3 (Length: 381)
Name: NF14809_high_3
Description: NF14809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14809_high_3 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 45 - 381
Target Start/End: Original strand, 14125368 - 14125715
Alignment:
| Q |
45 |
aagtattctcccccacaccacaaagtgttcagagagttggcaacaccactctctccaagnnnnnnnnnnngttgcgtttgattatttgagtgagccattt |
144 |
Q |
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| T |
14125368 |
aagtattctcccccacaccacaaagtgttcagagagttggcaacaccactctctccaagaaaaaataac--ttgagtttgattatttgagtgagccattt |
14125465 |
T |
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| Q |
145 |
caactcatataaaaacatcgatgtcccattcttggatcaagaattagtcttacttcatgttcaaattgcaaagttatagacatactttagggtgtctatt |
244 |
Q |
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| T |
14125466 |
caactcatataaaaacatcgatgtcccattctcggatcaagaattaatcttactttatgttcaaattgcaaagttatagacatactttagggtgtctatt |
14125565 |
T |
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| Q |
245 |
gagttaacnnnnnnntcactctcacacaccttattta-------------tctctagtctttttattctcttattagtatatcaagtgtgagtaggagtc |
331 |
Q |
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| T |
14125566 |
gagttaccaaaaaaaacactctcacacacctcgtttatctcttgtctatctctctagtctttttattctcttattagtatatcaagtgtgagtaggagtc |
14125665 |
T |
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| Q |
332 |
ttatgttgtttgaaaaagtggatgttgaacaatatataaatgagaggatc |
381 |
Q |
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| T |
14125666 |
ttatgttgtttgaaaaagtggatgttgaacaatatataaatgagaggatc |
14125715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 377
Target Start/End: Original strand, 33893897 - 33893966
Alignment:
| Q |
308 |
gtatatcaagtgtgagtaggagtcttatgttgtttgaaaaagtggatgttgaacaatatataaatgagag |
377 |
Q |
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| T |
33893897 |
gtatgtcaagtgtaagtaagattcttgtattgaatgaaaaagtggatattgaacaacatataaatgagag |
33893966 |
T |
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