View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14809_high_5 (Length: 356)
Name: NF14809_high_5
Description: NF14809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14809_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 1 - 339
Target Start/End: Original strand, 42893927 - 42894265
Alignment:
| Q |
1 |
tgagtagaagaaacggaagtgggccaaagctagatttgaagctgaatttgtcaccaccaagggtgaacagaagaatggaatcatcaccaacacgatcagc |
100 |
Q |
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| T |
42893927 |
tgagtagaagaaacggaagtgggccaaagctagatttgaagctgaatttgtcaccaccaagggtgaacagaagaatggaatcatcaccaacacgatcagc |
42894026 |
T |
|
| Q |
101 |
gtcggtgtcgccgccgagttcatgtgtttcatctgagaatggatcaagcagccctgaagcaacctccatgctgttagtaggttgtcctcgttgtctcatg |
200 |
Q |
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| T |
42894027 |
gtcggtgtcgccgccgagttcatgtgtttcatctgagaatggatcaagcagccctgaagcaacctccatgctgttagtaggttgtcctcgttgtctcatg |
42894126 |
T |
|
| Q |
201 |
tatgtgatgctctctgagaatgatccaaaatgtccaaaatgtcacagcaccgttttgcttgattttctcaacgctgagaacaacaacaataagaagagtt |
300 |
Q |
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| T |
42894127 |
tatgtgatgctctctgagaatgatccaaaatgtccaaaatgtcacagcaccgttttgcttgattttctcaacgctgagaacaacaacaataagaagagtt |
42894226 |
T |
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| Q |
301 |
agagtaataacagagttagaaacagagtactctgtttca |
339 |
Q |
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| T |
42894227 |
agagtaataacagagttagaaacagagtactctgtttca |
42894265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 149 - 265
Target Start/End: Complemental strand, 25583747 - 25583631
Alignment:
| Q |
149 |
cagccctgaagcaacctccatgctgttagtaggttgtcctcgttgtctcatgtatgtgatgctctctgagaatgatccaaaatgtccaaaatgtcacagc |
248 |
Q |
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| T |
25583747 |
cagcccagaagccacttccatggttttggttggttgtcctcgttgtcttatgtatgtcatgctttctgaagatgatccaaagtgccctaaatgtaaaagc |
25583648 |
T |
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| Q |
249 |
accgttttgcttgattt |
265 |
Q |
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|| ||||| |||||||| |
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| T |
25583647 |
actgttttacttgattt |
25583631 |
T |
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