View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14809_low_1 (Length: 699)
Name: NF14809_low_1
Description: NF14809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14809_low_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 469; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 15 - 661
Target Start/End: Original strand, 12037687 - 12038327
Alignment:
| Q |
15 |
caaaggcactcgtcatgttaagaaaatcaccgaggaactcaaacgcctgatcgagcaagagatgaagctaggagaagaagaagcagcagcagttattagt |
114 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| |
|
|
| T |
12037687 |
caaaggcactcgtcatgttaagaaaaccaccgagaaactcaaacgcctgatcgagcaagagacgaagctaggagaagaaga---agcagcagttattagt |
12037783 |
T |
|
| Q |
115 |
aatactactgagaaaagaaagtctgcatgtgaagattttgagaaaagtactgagcatgtagctgttggcnnnnnnnnnnnnnnnnnnnnnnttatagctc |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||| ||| |||||||||||||||| |||||| | |
|
|
| T |
12037784 |
aatactactgagaaaagaaagtctgcatgtgaagactttgagaaaaataccaagcatgtagctgttggaagagaaaatgagaaggaagagcttatagata |
12037883 |
T |
|
| Q |
215 |
aactgctgaagatgaacaactctgatgctgctgctgttcctgttgttattgttattgttggtgttcctggaattggaaaaactaaacttgctcatctcgt |
314 |
Q |
| |
|
||||| |||| |||| ||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
12037884 |
aactggtgaacctgaagaacactgatg---ctgctgttcctgttgttattgttattgttggtgttcctggaattggcaaaacaaaacttgctcatctcgt |
12037980 |
T |
|
| Q |
315 |
ttgtgaggatgagcaagtcgaaatgaattttgggttacaaccaatttggatcaaaacctttgatgttgaatctatagcaaaaagtgttgccgagtctcct |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
12037981 |
ttgtgaggatgagcaagtcgaaatgaattttgggttacaaccaatttggatcaaaacctttgatgttgaatctatagcaaaaagtgttgccgagtctcat |
12038080 |
T |
|
| Q |
415 |
catgagaaacgcctcttacttgttatagatgatttgagatttgagattaatgagcctgattatcttgagaagttgcagaagaaattaactgaagctgttg |
514 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12038081 |
catgagaaacgcctcttacttgttatagatgatttgagatttgagattaatgagcctgattatcttgagaagttgcagaagaaattaactgaagctgttg |
12038180 |
T |
|
| Q |
515 |
gtggccgtgctgatacggccatactcatcactacacgtagtaaccatgtcgcagacaacattgctgctggatatgttttgaagttgcaggggcttaatca |
614 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
12038181 |
gtggccgtgctgatacggccatactcattactacacgtagtaaccatgtcgccgacaacattgctgctggacatgttttgaagttgcaggggcttaatca |
12038280 |
T |
|
| Q |
615 |
agaggattcttggtccttgtttgaggaaattcatggagcagtttcaa |
661 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12038281 |
agaggattcttggtccttgtttgaggaaattcatggagcagtttcaa |
12038327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 104 - 651
Target Start/End: Original strand, 11858975 - 11859534
Alignment:
| Q |
104 |
cagttattagtaatactactgagaaaagaaagtctgcatgtgaagattttgagaaaagtactgagcatgtagctgttggcnnnnnnnnnnnnnnnnnnnn |
203 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11858975 |
cagttattagtaatactaatgagaaaagaaagttggcatacaaagattttgagaaaagtactgagcatgtagctgttggcagagaaagagagaagaagga |
11859074 |
T |
|
| Q |
204 |
nnttatagctcaactgctgaagatgaacaactctgatgctgctgctgttcctgttgttattgttattgttggtgttcctggaattggaaaaactaaactt |
303 |
Q |
| |
|
|||||| | ||||||||||||||||||| | || | ||||||||||| |||| |||| |||||||||||||||||||||||| ||||| |||||| |
|
|
| T |
11859075 |
gattatagataaactgctgaagatgaacaa---ggttgatactgctgttccttttgtaattgctattgttggtgttcctggaattggcaaaacaaaactt |
11859171 |
T |
|
| Q |
304 |
gctcatctcgtttgtgaggatgagcaagtcgaaatgaattttgggttacaaccaatttggatcaa----------aacc--tttgatgttgaatctatag |
391 |
Q |
| |
|
|||| |||||||||||| |||||||||||| || || || ||| || ||| ||||||||||||| ||| |||||||||||||| |||| |
|
|
| T |
11859172 |
gctcgtctcgtttgtgaagatgagcaagtcaaagggagttctggtttccaagcaatttggatcaatggtcttcatcaccaatttgatgttgaatccatag |
11859271 |
T |
|
| Q |
392 |
caaaaagtgttgccga---gtctcctcatgagaaacgcctcttacttgttatagatgatttgagatttgagattaatgagcctgattatcttgagaagtt |
488 |
Q |
| |
|
|||||| ||| | || || | |||| |||||||| ||||||||||||||||||||||| || ||||||| |||| || | |||| |||||||| |
|
|
| T |
11859272 |
taaaaagcgttactgatcggtatgttcataagaaacgcgtcttacttgttatagatgatttgcgaattgagat---tgagaatggtgatctcgagaagtt |
11859368 |
T |
|
| Q |
489 |
gcagaagaaattaactgaagctgttggtggccgtgctgatacggccatac---tcatcactacacgtagtaaccatgtcgcagacaacattgctgctgga |
585 |
Q |
| |
|
||||||||||||| | | |||| ||||| | ||||||| | ||||| | | || ||||| || | |||||| || |||| ||||||||| || |
|
|
| T |
11859369 |
gcagaagaaattagcgcaggctgcaggtggaaggactgataccgtcatacttgttacaacaacacgaagcagccatgttgccaacaaaattgctgctaga |
11859468 |
T |
|
| Q |
586 |
tatgttttgaagttgcaggggcttaatcaagaggattcttggtccttgtttgaggaaattcatgga |
651 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||| |||||| || | ||||||||| |
|
|
| T |
11859469 |
catgttttgaagttgcaggggcttaatcaagaggaatcttggtcattgtttcagcagattcatgga |
11859534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 429 - 636
Target Start/End: Original strand, 11827171 - 11827378
Alignment:
| Q |
429 |
cttacttgttatagatgatttgagatttgagattaatgagcctgattatcttgagaagttgcagaagaaattaactgaagctgttggtggccgtgctgat |
528 |
Q |
| |
|
||||||| ||||||||||||||||| ||| ||||||| ||| |||| | || |||||||| ||||||||||| | || | || |||||||||| | || |
|
|
| T |
11827171 |
cttacttattatagatgatttgagaattgcgattaataagcatgatgacctcgagaagttacagaagaaattgatggaggttgctggtggccgtaccaat |
11827270 |
T |
|
| Q |
529 |
acggccatactcatcactacacgtagtaaccatgtcgcagacaacattgctgctggatatgttttgaagttgcaggggcttaatcaagaggattcttggt |
628 |
Q |
| |
|
|| | |||||||| || ||| |||| ||||||||||| |||| |||| |||| ||||||||||||||||||||||||||||||| |||| ||||||| |
|
|
| T |
11827271 |
accgtgatactcattaccacatgtagcaaccatgtcgccaacaatattggtgctacatatgttttgaagttgcaggggcttaatcaaaaggaatcttggt |
11827370 |
T |
|
| Q |
629 |
ccttgttt |
636 |
Q |
| |
|
| |||||| |
|
|
| T |
11827371 |
cattgttt |
11827378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 243 - 346
Target Start/End: Original strand, 11826943 - 11827046
Alignment:
| Q |
243 |
tgctgctgttcctgttgttattgttattgttggtgttcctggaattggaaaaactaaacttgctcatctcgtttgtgaggatgagcaagtcgaaatgaat |
342 |
Q |
| |
|
|||||||||||||||| |||||| ||||||||||||| |||||||||| ||||| |||||||||||||||||||||||||| ||||||||| || |||| |
|
|
| T |
11826943 |
tgctgctgttcctgtttttattgctattgttggtgttactggaattgggaaaacaaaacttgctcatctcgtttgtgaggacgagcaagtcaaagcgaat |
11827042 |
T |
|
| Q |
343 |
tttg |
346 |
Q |
| |
|
|||| |
|
|
| T |
11827043 |
tttg |
11827046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 258 - 366
Target Start/End: Original strand, 11730816 - 11730924
Alignment:
| Q |
258 |
tgttattgttattgttggtgttcctggaattggaaaaactaaacttgctcatctcgtttgtgaggatgagcaagtcgaaatgaattttgggttacaacca |
357 |
Q |
| |
|
|||| |||| |||||||||||||| ||||| || || || |||||||| | || ||||| ||||||||||||||| || ||||||||| |||||||| |
|
|
| T |
11730816 |
tgtttttgtcattgttggtgttccgggaatagggaagacaaaacttgcacggcttgtttgcgaggatgagcaagtcaaagcaaattttgggctacaacca |
11730915 |
T |
|
| Q |
358 |
atttggatc |
366 |
Q |
| |
|
||||||||| |
|
|
| T |
11730916 |
atttggatc |
11730924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 258 - 366
Target Start/End: Complemental strand, 11903389 - 11903281
Alignment:
| Q |
258 |
tgttattgttattgttggtgttcctggaattggaaaaactaaacttgctcatctcgtttgtgaggatgagcaagtcgaaatgaattttgggttacaacca |
357 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| ||||| |||||||| ||| ||||| || ||||| |||||| || ||||||| || ||||| |
|
|
| T |
11903389 |
tgttattgtcattgttggtgttcctggaattgggaaaacaaaacttgcaagtcttgtttgcgaagatgaacaagtcaaagctcattttggtttcgaacca |
11903290 |
T |
|
| Q |
358 |
atttggatc |
366 |
Q |
| |
|
||||||||| |
|
|
| T |
11903289 |
atttggatc |
11903281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 258 - 366
Target Start/End: Original strand, 11730372 - 11730480
Alignment:
| Q |
258 |
tgttattgttattgttggtgttcctggaattggaaaaactaaacttgctcatctcgtttgtgaggatgagcaagtcgaaatgaattttgggttacaacca |
357 |
Q |
| |
|
|||| |||| |||||||||||| | ||||| ||||| || |||||||| | ||| ||||| |||||||||||||| || ||||||||| ||| ||| |
|
|
| T |
11730372 |
tgtttttgtcattgttggtgtttcaggaataggaaagacaaaacttgcacgtcttgtttgcaaggatgagcaagtcaaagcaaattttgggccacagcca |
11730471 |
T |
|
| Q |
358 |
atttggatc |
366 |
Q |
| |
|
||||||||| |
|
|
| T |
11730472 |
atttggatc |
11730480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University