View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14809_low_10 (Length: 305)

Name: NF14809_low_10
Description: NF14809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14809_low_10
NF14809_low_10
[»] chr4 (1 HSPs)
chr4 (1-296)||(26484845-26485139)


Alignment Details
Target: chr4 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 296
Target Start/End: Original strand, 26484845 - 26485139
Alignment:
Q  1 ttttagaatgcatgctgaaagtgctcctaaattatttcatctttacaggtgtttactcaaaattttcaaatgatgcaatcggaaatgtctaaccctgcat 100  Q
    ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26484845 ttttagaatgcatgctgaa-gtgctcctaaattatttgatctttacaggtgtttactcaaaattttcaaatgatgcaatcggaaatgtctaaccctgcat 26484943  T
Q  101 atcttcaattcaattcagcacaacaacaagtttcatgttgtggtggattgataaacaatatggggatagttcctccggaaattggggttcgaaggaacat 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||    
T  26484944 atcttcaattcaattcagcacaacaacaagtttcatgttgtggtggattgataaacaatatggggatactccctccggaaattggggttcgaaggaacat 26485043  T
Q  201 taatgcaccggcatctgcatctttacctgaaatctttctcgacccatcatgtttcactgtatgtttcctctctatgcatctgtcctcaaaaatatt 296  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||    
T  26485044 taatgcaccggcatctgcatctttacctgaaatctttctcgacccatcatgtttcactgtatgtttcctctctatgtatctgtcctcgaaaatatt 26485139  T

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