View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14809_low_14 (Length: 267)
Name: NF14809_low_14
Description: NF14809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14809_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 113; Significance: 3e-57; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 33 - 173
Target Start/End: Complemental strand, 30751738 - 30751598
Alignment:
| Q |
33 |
tttatatatttaatgttacattgctttgcatgtacgttaaaaatatcatttctcaaaacaaatatcagtaaatgacacacaccagaactaattactccaa |
132 |
Q |
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| T |
30751738 |
tttatatttgtaatgttacattactttgcatgtacgttaaaaatatcaattctcaaaacaaatatgagtaaatgacacacaccagaactaattactccaa |
30751639 |
T |
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| Q |
133 |
agatcattatactgtcggccatgttttaatggttaaagtgg |
173 |
Q |
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| T |
30751638 |
agatcattattctgtcggccacgttttaatggttaaagtgg |
30751598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 90 - 202
Target Start/End: Original strand, 30675137 - 30675249
Alignment:
| Q |
90 |
acaaatatcagtaaatgacacacaccagaactaattactccaaagatcattatactgtcggccatgttttaatggttaaagtggatcaatcaaactcttc |
189 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| ||||||| ||||||||||||||||||| ||| ||| |
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| T |
30675137 |
acaaatatcagtaaatgacacacaccggaactaattactccaaagatcattattctgtcggccacgttttaaaggttaaagtggatcaatcatactattc |
30675236 |
T |
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| Q |
190 |
ctaacaattatac |
202 |
Q |
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| T |
30675237 |
ctaacaattatac |
30675249 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 87 - 179
Target Start/End: Complemental strand, 30062259 - 30062167
Alignment:
| Q |
87 |
aaaacaaatatcagtaaatgacacacaccagaactaattactccaaagatcattatactgtcggccatgttttaatggttaaagtggatcaat |
179 |
Q |
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| T |
30062259 |
aaaacaaatatcagtaaatgacacacaccagaactaattactccaaagataattattctgtcggccacgttttaaaggttaaagtggatcaat |
30062167 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 87 - 177
Target Start/End: Complemental strand, 30049672 - 30049582
Alignment:
| Q |
87 |
aaaacaaatatcagtaaatgacacacaccagaactaattactccaaagatcattatactgtcggccatgttttaatggttaaagtggatca |
177 |
Q |
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| T |
30049672 |
aaaacaaatatgagtaaatgacacacaccagaactaattactccaaagataattattctgtcggccacgttttaaaggttaaagtggatca |
30049582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 204 - 263
Target Start/End: Complemental strand, 30751599 - 30751540
Alignment:
| Q |
204 |
ggccagtggggactagattcaaagtgtgaaaacaaagagacaaataatatcaagaataat |
263 |
Q |
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| T |
30751599 |
ggccagtggggactagattcaaagtgtgaaaacaaagagacaaataatatcaataataat |
30751540 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 136 - 208
Target Start/End: Complemental strand, 30488195 - 30488123
Alignment:
| Q |
136 |
tcattatactgtcggccatgttttaatggttaaagtggatcaatcaaactcttcctaacaattatacgggcca |
208 |
Q |
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| T |
30488195 |
tcattattttgtcggccacgtattaatggttaaagtggatcaatcaaactcttcctagcaattatacaggcca |
30488123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 136 - 208
Target Start/End: Complemental strand, 30492380 - 30492308
Alignment:
| Q |
136 |
tcattatactgtcggccatgttttaatggttaaagtggatcaatcaaactcttcctaacaattatacgggcca |
208 |
Q |
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||||||| ||||||||| || ||||||||||||||||||||||||||||||||||| ||||||||| ||||| |
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| T |
30492380 |
tcattattttgtcggccacgtattaatggttaaagtggatcaatcaaactcttcctagcaattatacaggcca |
30492308 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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