View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14809_low_15 (Length: 263)
Name: NF14809_low_15
Description: NF14809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14809_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 18 - 253
Target Start/End: Original strand, 4891453 - 4891688
Alignment:
| Q |
18 |
attaatctagtgactatagttctaattatatgcacaaatgaaatggatttaattatatgaatgatttttattcattatagttttgtgttttgtttcagct |
117 |
Q |
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| T |
4891453 |
attaatctagtgactatagttctaattatatgcacaaatgaaatggatttaattatatgaatgatttttattcattatagttttgtgttttgtttcagct |
4891552 |
T |
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| Q |
118 |
attggaagaaatggaaatagagggttgtgatttgtttcaacaatgtgaacaaaacttgtttggtgaagaagagttactttcaaatgacatagcaagtatt |
217 |
Q |
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| T |
4891553 |
attggaagaaatggaaatagagggttgtgatttgtttcaacaatgtgaacaaaacttgtttggtgaaaaagagtttctttcaaatgacatagcaagtatt |
4891652 |
T |
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| Q |
218 |
tttcaacaagaggaaaatttccaacatcaacctttg |
253 |
Q |
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| T |
4891653 |
tttcaacaagaggaaaatttccaacatcaacctttg |
4891688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 109 - 258
Target Start/End: Original strand, 4916400 - 4916549
Alignment:
| Q |
109 |
gtttcagctattggaagaaatggaaatagagggttgtgatttgtttcaacaatgtgaacaaaacttgtttggtgaagaagagttactttcaaatgacata |
208 |
Q |
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|||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | ||||| |||||||| |
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| T |
4916400 |
gtttcagctatttgaagaaaatgaaatagagggttgtgatttgtttcaacaatgcgaacaaaacttgtttggtgaagaagagcttatttcacatgacata |
4916499 |
T |
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| Q |
209 |
gcaagtatttttcaacaagaggaaaatttccaacatcaacctttgctact |
258 |
Q |
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| T |
4916500 |
gcaagtatttttcaacaagaggaaaatttgcaacaacaaccattgttact |
4916549 |
T |
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