View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14809_low_18 (Length: 238)
Name: NF14809_low_18
Description: NF14809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14809_low_18 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 16 - 238
Target Start/End: Original strand, 2127433 - 2127655
Alignment:
| Q |
16 |
cacttatgacatatttagatcaacttatttgagnnnnnnnacaagtataaacaattgtgagagattgtttggaaaagcttatagaaacagcttttgaaat |
115 |
Q |
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|||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2127433 |
cacttatgacatatttggatcaacttatttgagtttttttacaagtataaacaattgtgagagattgtttggaaaagcttatagaaacagcttttgaaat |
2127532 |
T |
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| Q |
116 |
gtctataagctatttataacttattcataagttcttcggagtaatttatgaaaacaacttaaagcttgcatgaaaacggtttgattttaatattattgtc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2127533 |
gtctataagctatttataacttattcataagttcttcggaataatttacgaaaacaacttaaagcttgcatgaaaacggtttgattttaatattattgtc |
2127632 |
T |
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| Q |
216 |
ataaaactagtttgtatacaaac |
238 |
Q |
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||||||||||||||||||||||| |
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| T |
2127633 |
ataaaactagtttgtatacaaac |
2127655 |
T |
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