View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14809_low_20 (Length: 227)
Name: NF14809_low_20
Description: NF14809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14809_low_20 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 2127640 - 2127866
Alignment:
| Q |
1 |
tagtttgtatacaaacacttatatcataagcaattgtgctacaaacgtttaattaagttgtttatccaaacattcctttattcattcacatagcaaaact |
100 |
Q |
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| T |
2127640 |
tagtttgtatacaaacacttatatcataagcaattgtgctacaaacgtttaattaagttgtttatccaaacattcctttattcattcacatagcaaaact |
2127739 |
T |
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| Q |
101 |
gtttttcctttgtctgttttatggttgaaacatgatattctatttctgggtaaattggaatttctgattttggaaatattaggcgaagcccaagacaatg |
200 |
Q |
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| T |
2127740 |
gtttttcctttgtctgttttatggttgaaacatgatattctatttctgggtaaattggaatttctgattttggaagtattaggcgaagcccaagactatg |
2127839 |
T |
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| Q |
201 |
gaacacagtcaaggagcacacacaact |
227 |
Q |
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||||||||||||||||||||||||||| |
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| T |
2127840 |
gaacacagtcaaggagcacacacaact |
2127866 |
T |
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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 81
Target Start/End: Original strand, 8786407 - 8786440
Alignment:
| Q |
48 |
tttaattaagttgtttatccaaacattcctttat |
81 |
Q |
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| T |
8786407 |
tttaattaagttgtttatccaaacattactttat |
8786440 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 73
Target Start/End: Original strand, 27517980 - 27518040
Alignment:
| Q |
13 |
aaacacttatatcataagcaattgtgctacaaacgtttaattaagttgtttatccaaacat |
73 |
Q |
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| T |
27517980 |
aaacacttatatgataagcacttatgctacatgcgcttaactaagttgtctatccaaacat |
27518040 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 73
Target Start/End: Complemental strand, 9795202 - 9795166
Alignment:
| Q |
37 |
tgctacaaacgtttaattaagttgtttatccaaacat |
73 |
Q |
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||||| |||||||||||||||||||||||| |||||| |
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| T |
9795202 |
tgctataaacgtttaattaagttgtttatcaaaacat |
9795166 |
T |
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