View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14809_low_22 (Length: 219)
Name: NF14809_low_22
Description: NF14809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14809_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-110; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 8775465 - 8775261
Alignment:
| Q |
1 |
cacattatcttcatctgctgcatcacactctatcacatgatcatttttatcaattaaagcggccatatttccatgatcttcatccattttatcatcatct |
100 |
Q |
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| T |
8775465 |
cacattatcttcatctgctgcatcacactctatcacatgatcatttttatcaattaaagcggccatatttccatgatcttcatccattttatcatcatct |
8775366 |
T |
|
| Q |
101 |
tcaccggtatttgcactcaaattgtttacattatcttcatctgcatcaagatctatcgtatggtcatttttagcatttaaagcagccatgttttcaccat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
8775365 |
tcaccggtatttgcactcaaattgtttacattatcttcatctgcatcaagatctatcgtatggtcatttttagcatttaaagcagccatattttcaccat |
8775266 |
T |
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| Q |
201 |
tcatc |
205 |
Q |
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||||| |
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| T |
8775265 |
tcatc |
8775261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 37 - 144
Target Start/End: Complemental strand, 8775555 - 8775448
Alignment:
| Q |
37 |
atgatcatttttatcaattaaagcggccatatttccatgatcttcatccattttatcatcatcttcaccggtatttgcactcaaattgtttacattatct |
136 |
Q |
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|||||| ||||||||||||||||| ||| ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
8775555 |
atgatcgtttttatcaattaaagcagccgtatttccatgatcttcacccatttcatcatcatcttcaccggtatttgcactcaaattgttcacattatct |
8775456 |
T |
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| Q |
137 |
tcatctgc |
144 |
Q |
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|||||||| |
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| T |
8775455 |
tcatctgc |
8775448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 38 - 187
Target Start/End: Complemental strand, 8775677 - 8775528
Alignment:
| Q |
38 |
tgatcatttttatcaattaaagcggccatatttccatgatcttcatccattttatcatcatcttcaccggtatttgcactcaaattgtttacattatctt |
137 |
Q |
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|||| |||||||||||||||||| || ||||||||| |||||||||| ||| |||| | |||||||| |||| || ||||||| | | ||| ||||| |
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| T |
8775677 |
tgattatttttatcaattaaagcatccgtatttccataatcttcatccgtttcatcaacctcttcaccagtatatgtactcaaaaattctgcataatctt |
8775578 |
T |
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| Q |
138 |
catctgcatcaagatctatcgtatggtcatttttagcatttaaagcagcc |
187 |
Q |
| |
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|||| || ||| |||||| ||||| || |||||| || ||||||||||| |
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| T |
8775577 |
catcagcctcatcatctatagtatgatcgtttttatcaattaaagcagcc |
8775528 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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