View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14809_low_3 (Length: 381)

Name: NF14809_low_3
Description: NF14809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14809_low_3
NF14809_low_3
[»] chr2 (2 HSPs)
chr2 (45-381)||(14125368-14125715)
chr2 (308-377)||(33893897-33893966)


Alignment Details
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 45 - 381
Target Start/End: Original strand, 14125368 - 14125715
Alignment:
Q  45 aagtattctcccccacaccacaaagtgttcagagagttggcaacaccactctctccaagnnnnnnnnnnngttgcgtttgattatttgagtgagccattt 144  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            ||| |||||||||||||||||||||||||    
T  14125368 aagtattctcccccacaccacaaagtgttcagagagttggcaacaccactctctccaagaaaaaataac--ttgagtttgattatttgagtgagccattt 14125465  T
Q  145 caactcatataaaaacatcgatgtcccattcttggatcaagaattagtcttacttcatgttcaaattgcaaagttatagacatactttagggtgtctatt 244  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  14125466 caactcatataaaaacatcgatgtcccattctcggatcaagaattaatcttactttatgttcaaattgcaaagttatagacatactttagggtgtctatt 14125565  T
Q  245 gagttaacnnnnnnntcactctcacacaccttattta-------------tctctagtctttttattctcttattagtatatcaagtgtgagtaggagtc 331  Q
    |||||| |        |||||||||||||||  ||||             ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14125566 gagttaccaaaaaaaacactctcacacacctcgtttatctcttgtctatctctctagtctttttattctcttattagtatatcaagtgtgagtaggagtc 14125665  T
Q  332 ttatgttgtttgaaaaagtggatgttgaacaatatataaatgagaggatc 381  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14125666 ttatgttgtttgaaaaagtggatgttgaacaatatataaatgagaggatc 14125715  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 377
Target Start/End: Original strand, 33893897 - 33893966
Alignment:
Q  308 gtatatcaagtgtgagtaggagtcttatgttgtttgaaaaagtggatgttgaacaatatataaatgagag 377  Q
    |||| |||||||| |||| || |||| | |||  ||||||||||||| |||||||| |||||||||||||    
T  33893897 gtatgtcaagtgtaagtaagattcttgtattgaatgaaaaagtggatattgaacaacatataaatgagag 33893966  T

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