View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14809_low_4 (Length: 364)

Name: NF14809_low_4
Description: NF14809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14809_low_4
NF14809_low_4
[»] chr7 (5 HSPs)
chr7 (46-349)||(21378375-21378679)
chr7 (54-266)||(48070692-48070905)
chr7 (65-195)||(12471700-12471831)
chr7 (54-153)||(3996951-3997050)
chr7 (65-158)||(12471012-12471106)
[»] chr6 (8 HSPs)
chr6 (54-123)||(23301489-23301558)
chr6 (55-282)||(9826816-9827044)
chr6 (54-144)||(7176496-7176587)
chr6 (54-282)||(11846318-11846547)
chr6 (65-158)||(2454112-2454206)
chr6 (97-150)||(5076250-5076304)
chr6 (54-123)||(23300503-23300572)
chr6 (225-277)||(2453993-2454045)
[»] chr3 (8 HSPs)
chr3 (54-142)||(44285638-44285727)
chr3 (54-282)||(28550521-28550750)
chr3 (65-158)||(44471106-44471200)
chr3 (65-145)||(26918458-26918538)
chr3 (97-158)||(779500-779563)
chr3 (54-122)||(12937768-12937836)
chr3 (54-326)||(26757671-26757946)
chr3 (225-326)||(44681835-44681934)
[»] chr2 (7 HSPs)
chr2 (65-282)||(29109041-29109259)
chr2 (54-158)||(3919858-3919963)
chr2 (97-158)||(5526337-5526399)
chr2 (63-152)||(38607053-38607143)
chr2 (213-278)||(28199816-28199881)
chr2 (56-158)||(27866691-27866794)
chr2 (56-154)||(37630410-37630509)
[»] chr8 (5 HSPs)
chr8 (54-158)||(9505094-9505199)
chr8 (65-158)||(3767659-3767753)
chr8 (54-282)||(32321877-32322107)
chr8 (54-158)||(16570865-16570970)
chr8 (97-145)||(3555434-3555483)
[»] chr5 (2 HSPs)
chr5 (54-158)||(7239282-7239387)
chr5 (54-158)||(7244458-7244563)
[»] chr4 (3 HSPs)
chr4 (54-158)||(53393158-53393263)
chr4 (213-335)||(8605965-8606082)
chr4 (55-144)||(42141327-42141417)
[»] chr1 (1 HSPs)
chr1 (54-153)||(513031-513131)


Alignment Details
Target: chr7 (Bit Score: 269; Significance: 1e-150; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 46 - 349
Target Start/End: Complemental strand, 21378679 - 21378375
Alignment:
Q  46 gatgtttagtttggtttgattcaaaaccgaaccgaatcaaccgaaattgacctagtttggttcggttctcagtttttattttgaaattcaaagaaccgat 145  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  21378679 gatgtttagtttgatttgattcaaaaccgaaccgaatcaaccgaaattgacctagtttggttcggttctcagtttttattttgagattcaaagaaccgat 21378580  T
Q  146 aaaccgaatcgataataaccacattgatcattttattaatagcatccctcctcgcccacatttacgtttaggcctaaatttaaagtccaa-cgtaaaata 244  Q
     ||||||||||||||||||||||| | |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||    
T  21378579 gaaccgaatcgataataaccacatcgttcattttattaatagcatccctcctcacccacatttacgtttaggcctaaatttaaagtccaatcgtaaaata 21378480  T
Q  245 attcttcatccatttactttctccgatcatcatctcattttatctcatcattcaaactttattttatttgtactaaaaaagagaaaccctaaccgccacc 344  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21378479 attcttaatccatttactttctccgatcatcatctcattttatctcatcattcaaactttattttatttgtactaaaaaagagaaaccctaaccgccacc 21378380  T
Q  345 taccc 349  Q
    |||||    
T  21378379 taccc 21378375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 54 - 266
Target Start/End: Original strand, 48070692 - 48070905
Alignment:
Q  54 gtttggtttgattcaaaaccgaaccgaatcaaccgaaattgacctagtttggttcggttctcagttttt-attttgaaattcaaagaaccgataaaccga 152  Q
    ||||| |||| |||||||||||||||||  |||| |||  || |||||||| |||||||||| |||||| ||||||| || |||||||||||||||| ||    
T  48070692 gtttgatttggttcaaaaccgaaccgaactaacctaaaccgatctagtttgattcggttctcggtttttaattttgagatccaaagaaccgataaactga 48070791  T
Q  153 atcgataataaccacattgatcattttattaatagcatccctcctcgcccacatttacgtttaggcctaaatttaaagtccaacgtaaaataattcttca 252  Q
    | ||||  ||||| || | | ||||| | |||||  ||||||| || | |||| ||| | |||  |  ||| |||||||||||| ||||||| ||||| |    
T  48070792 accgatgttaacctcactcaccatttcagtaataatatccctcttcacacacacttatgattaatctcaaaattaaagtccaacataaaatacttcttaa 48070891  T
Q  253 tccatttactttct 266  Q
    | |||| |||||||    
T  48070892 ttcattcactttct 48070905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 65 - 195
Target Start/End: Complemental strand, 12471831 - 12471700
Alignment:
Q  65 ttcaaaaccgaaccgaatcaaccgaaattgacctagtttggttcggttctcagttttt-attttgaaattcaaagaaccgataaaccgaatcgataataa 163  Q
    ||||||||||||||||| ||||  |||| || ||||||| |||||||||| ||||||| ||||||| |||||||||| |||| ||| ||||||||  |||    
T  12471831 ttcaaaaccgaaccgaaccaacttaaatcgatctagtttagttcggttcttagtttttaattttgagattcaaagaatcgatgaactgaatcgatgttaa 12471732  T
Q  164 ccacattgatcattttattaatagcatccctc 195  Q
    || || |  |||||||| |||||  |||||||    
T  12471731 cctcactcctcattttagtaatattatccctc 12471700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 54 - 153
Target Start/End: Complemental strand, 3997050 - 3996951
Alignment:
Q  54 gtttggtttgattcaaaaccgaaccgaatcaaccgaaattgacctagtttggttcggttctcagtttttattttgaaattcaaagaaccgataaaccgaa 153  Q
    |||||||||| |||||||||||||| || ||| | |||   |||| |||||||||||||||| ||||| ||||||| || ||| ||||| || |||||||    
T  3997050 gtttggtttggttcaaaaccgaacctaaccaatctaaaccaaccttgtttggttcggttctcggttttcattttgagatccaaggaacctatgaaccgaa 3996951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 65 - 158
Target Start/End: Complemental strand, 12471106 - 12471012
Alignment:
Q  65 ttcaaaaccgaaccgaatcaaccgaaattgacctagtttggttcggttctcagttttt-attttgaaattcaaagaaccgataaaccgaatcgat 158  Q
    ||||||| |||||| || ||||| |||| |  ||||||| |||||||||||||||||| ||||||| || |||| ||||||| |||  |||||||    
T  12471106 ttcaaaatcgaacctaaccaacctaaatcggtctagtttagttcggttctcagtttttaattttgagatccaaaaaaccgatgaacttaatcgat 12471012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 4e-17; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 54 - 123
Target Start/End: Original strand, 23301489 - 23301558
Alignment:
Q  54 gtttggtttgattcaaaaccgaaccgaatcaaccgaaattgacctagtttggttcggttctcagttttta 123  Q
    |||||||| | ||||||||||||||||| ||||| ||| ||| |||||||||||||||||||||||||||    
T  23301489 gtttggttcggttcaaaaccgaaccgaaccaacctaaactgatctagtttggttcggttctcagttttta 23301558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 55 - 282
Target Start/End: Original strand, 9826816 - 9827044
Alignment:
Q  55 tttggtttgattcaaaaccgaaccgaatcaaccgaaattgacctagtttggttcggttctcagttttt-attttgaaattcaaagaaccgataaaccgaa 153  Q
    ||||||| | || |||||||||||||| ||||  |||  || ||||||||||||| ||||| |||||| |||||||||| |||||||||||| |||| ||    
T  9826816 tttggttcggttgaaaaccgaaccgaaccaacataaaccgatctagtttggttcgattctcggtttttaattttgaaatccaaagaaccgatgaaccaaa 9826915  T
Q  154 tcgataataaccacattgatcattttattaatagcatccctcctcgcccacatttacgtttaggcctaaatttaaagtccaacgtaaaataattcttcat 253  Q
      |||  ||||| || |   | ||||| |||||  |||||||||| | |||  ||| | ||| ||  ||  |||||||||||| ||||||| | ||| ||    
T  9826916 ctgatgttaacctcacttcccgttttagtaatattatccctcctcacacacgcttatgattaagctcaatattaaagtccaacataaaatactccttaat 9827015  T
Q  254 ccatttactttctccgatcatcatctcat 282  Q
     |||| ||||||||| |||||||||||||    
T  9827016 tcattcactttctcccatcatcatctcat 9827044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 54 - 144
Target Start/End: Complemental strand, 7176587 - 7176496
Alignment:
Q  54 gtttggtttgattcaaaaccgaaccgaatcaaccgaaattgacctagtttggttcggttctcag-tttttattttgaaattcaaagaaccga 144  Q
    |||||||||| ||||||| ||||||||| ||||| |||  || |||||||||||||||| |||| |||||||||||| || ||| |||||||    
T  7176587 gtttggtttggttcaaaatcgaaccgaaccaacctaaaccgatctagtttggttcggttatcagttttttattttgagatccaatgaaccga 7176496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 282
Target Start/End: Original strand, 11846318 - 11846547
Alignment:
Q  54 gtttggtttgattcaaaaccgaaccgaatcaaccgaaattgacctagtttggttcggttctcagttttt-attttgaaattcaaagaaccgataaaccga 152  Q
    |||||||||| ||||||||||||| ||| ||||  |||  || ||||||||||||||||||| |||||| ||||||| || ||| ||||| || |||| |    
T  11846318 gtttggtttggttcaaaaccgaactgaaccaacttaaaccgatctagtttggttcggttctcggtttttaattttgagatccaatgaaccaatgaaccaa 11846417  T
Q  153 atcgataataaccacattgatcattttattaatagcatccctcctcgcccacatttacgtttaggcctaaatttaaagtccaacgtaaaataattcttca 252  Q
    || |||  || || || |   ||||||| |||||  |||||||||| | |||| ||| | ||| ||  ||| |||||||||||| || |||| | ||| |    
T  11846418 attgatgctatcctcactccccattttagtaatattatccctcctcacacacacttatgattaagctcaaaattaaagtccaacatacaatactccttaa 11846517  T
Q  253 tccatttactttctccgatcatcatctcat 282  Q
    | |||  ||||||| | |||||||||||||    
T  11846518 ttcatccactttcttccatcatcatctcat 11846547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 65 - 158
Target Start/End: Complemental strand, 2454206 - 2454112
Alignment:
Q  65 ttcaaaaccgaaccgaatcaaccgaaattgacctagtttggttcggttctcagttttt-attttgaaattcaaagaaccgataaaccgaatcgat 158  Q
    ||||||| ||||||||| ||||| ||| |||  |||||||||||| ||||  |||||| ||||||| || ||||||||| | |||||||||||||    
T  2454206 ttcaaaatcgaaccgaaccaacctaaactgatatagtttggttcgattcttggtttttaattttgagatccaaagaaccaacaaaccgaatcgat 2454112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 97 - 150
Target Start/End: Original strand, 5076250 - 5076304
Alignment:
Q  97 ctagtttggttcggttctcagtttt-tattttgaaattcaaagaaccgataaacc 150  Q
    |||||||||||| |||||| ||||| ||||||||||| |||||||||||||||||    
T  5076250 ctagtttggttccgttctcggttttttattttgaaatccaaagaaccgataaacc 5076304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 54 - 123
Target Start/End: Original strand, 23300503 - 23300572
Alignment:
Q  54 gtttggtttgattcaaaaccgaaccgaatcaaccgaaattgacctagtttggttcggttctcagttttta 123  Q
    |||||||| | |||||||| |||||||| ||||| ||| ||| ||||||| ||||||||||| |||||||    
T  23300503 gtttggttcggttcaaaactgaaccgaaccaacctaaactgatctagtttagttcggttctcggttttta 23300572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 225 - 277
Target Start/End: Complemental strand, 2454045 - 2453993
Alignment:
Q  225 ttaaagtccaacgtaaaataattcttcatccatttactttctccgatcatcat 277  Q
    |||||||||||| ||||||| ||||| || |||| ||||||||| ||||||||    
T  2454045 ttaaagtccaacataaaatatttcttaattcattcactttctcccatcatcat 2453993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 54 - 142
Target Start/End: Original strand, 44285638 - 44285727
Alignment:
Q  54 gtttggtttgattcaaaaccgaaccgaatcaaccgaaattgacctagtttggttcggttctcagttttt-attttgaaattcaaagaacc 142  Q
    |||||||| | ||||||||||||||||| ||||| |||| ||  ||||||||||| |||||| |||||| ||||||||||||||||||||    
T  44285638 gtttggttcggttcaaaaccgaaccgaaccaacctaaatcgatttagtttggttcagttctcggtttttaattttgaaattcaaagaacc 44285727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 54 - 282
Target Start/End: Original strand, 28550521 - 28550750
Alignment:
Q  54 gtttggtttgattcaaaaccgaaccgaatcaaccgaaattgacctagtttggttcggttctcagttttt-attttgaaattcaaagaaccgataaaccga 152  Q
    |||||||| | |||||| |||||||||| ||||  |||  || ||||||||||||| ||||| |||||| ||||||| ||  ||||||||||| ||||||    
T  28550521 gtttggttcggttcaaatccgaaccgaaccaacttaaacggatctagtttggttcgattctcggtttttaattttgagatctaaagaaccgatgaaccga 28550620  T
Q  153 atcgataataaccacattgatcattttattaatagcatccctcctcgcccacatttacgtttaggcctaaatttaaagtccaacgtaaaataattcttca 252  Q
    ||||||  ||||| || |    |||||   ||||  ||| |||||| | |||| ||| | |||  |  ||| |||||||||||||||||||| ||||  |    
T  28550621 atcgatgttaacctcactccctattttggcaatattatctctcctcacacacacttatgattaaactcaaaattaaagtccaacgtaaaatacttctcaa 28550720  T
Q  253 tccatttactttctccgatcatcatctcat 282  Q
    | |||| ||||||||| |||||||||||||    
T  28550721 ttcattcactttctcccatcatcatctcat 28550750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 65 - 158
Target Start/End: Original strand, 44471106 - 44471200
Alignment:
Q  65 ttcaaaaccgaaccgaatcaaccgaaattgacctagtttggttcggttctcagttttta-ttttgaaattcaaagaaccgataaaccgaatcgat 158  Q
    |||||||||||||| || ||| | |||  || ||||||||||||||||||  ||||||| ||||||||| |||||||||||| ||||||| ||||    
T  44471106 ttcaaaaccgaaccaaaccaatctaaaccgatctagtttggttcggttcttggtttttaattttgaaatccaaagaaccgatgaaccgaaccgat 44471200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 65 - 145
Target Start/End: Complemental strand, 26918538 - 26918458
Alignment:
Q  65 ttcaaaaccgaaccgaatcaaccgaaattgacctagtttggttcggttctcagttttt-attttgaaattcaaagaaccgat 145  Q
    ||||||||| ||||||| ||||| ||||||| |||||||||||| ||||||| ||||| ||||||| ||||||||| |||||    
T  26918538 ttcaaaacc-aaccgaaccaacctaaattgatctagtttggttcagttctcaatttttaattttgagattcaaagagccgat 26918458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 158
Target Start/End: Complemental strand, 779563 - 779500
Alignment:
Q  97 ctagtttggttcggttctcagttttta--ttttgaaattcaaagaaccgataaaccgaatcgat 158  Q
    ||||||||||||||||||  |||||||  ||||||||| |||||||||||| ||||||| ||||    
T  779563 ctagtttggttcggttcttggtttttaatttttgaaatccaaagaaccgatgaaccgaaccgat 779500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 122
Target Start/End: Complemental strand, 12937836 - 12937768
Alignment:
Q  54 gtttggtttgattcaaaaccgaaccgaatcaaccgaaattgacctagtttggttcggttctcagttttt 122  Q
    ||||||||||||| |||||||||||||| ||||| |||  || | | |||||||||||||||| |||||    
T  12937836 gtttggtttgattgaaaaccgaaccgaaccaacctaaaccgatcaattttggttcggttctcaattttt 12937768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 326
Target Start/End: Original strand, 26757671 - 26757946
Alignment:
Q  54 gtttggtttgattcaaaaccgaaccgaatcaaccgaaattgacctagtttggttcggttctcagttttta-ttttgaaattcaaagaaccgataaaccga 152  Q
    |||||||||  || ||||| |||||||| ||||| |||| ||  ||| |||||||||||||  | ||||| |||||| || ||||||| |||||||| ||    
T  26757671 gtttggtttagtttaaaactgaaccgaaccaacctaaatcgatatagattggttcggttcttggattttaattttgagatccaaagaatcgataaactga 26757770  T
Q  153 atcgataataaccacattgatcattttattaatagcatccctcctcgcccacat--ttacgtttaggcctaaatttaaagtccaacgtaaaataattctt 250  Q
    | ||||| ||||| || |   ||||||| |||||  |||| ||| | | ||||   ||| | ||| ||  ||| ||||||| |||| ||||||| | |||    
T  26757771 accgatagtaacctcactctccattttagtaatattatccttccacacacacacacttatgattaagctcaaaattaaagttcaacataaaatactcctt 26757870  T
Q  251 catccatttactttctccgatcatcatctcattttatctcatcattcaaactttattttatttgtactaaaaaaga 326  Q
     || |||| ||||||||  ||||||||||||| | |||||||||  || ||| |||||  ||| ||||||||||||    
T  26757871 aattcattcactttctctcatcatcatctcatctcatctcatcacccacactctatttcgtttctactaaaaaaga 26757946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 326
Target Start/End: Complemental strand, 44681934 - 44681835
Alignment:
Q  225 ttaaagtccaacgtaaaataattcttcatccatttactttctccgatcatcatctcattttatctcatcattcaaactttattttatttgtactaaaaaa 324  Q
    |||||||||||| ||||||| | ||| || |||||||||||||| |||||||  |||| | ||||||||| ||| | | |||||  ||| ||||||||||    
T  44681934 ttaaagtccaacataaaatactccttaattcatttactttctcccatcatca--tcatctcatctcatcactcataatctatttcgtttatactaaaaaa 44681837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 65 - 282
Target Start/End: Complemental strand, 29109259 - 29109041
Alignment:
Q  65 ttcaaaaccgaaccgaatcaaccgaaattgacctagtttggttcggttctcagttttt-attttgaaattcaaagaaccgataaaccgaatcgataataa 163  Q
    ||||||||||||||||| ||||| |||   | ||||||||||| ||||||| |||||| ||||||| || |||||||||||| |||| |||||||  |||    
T  29109259 ttcaaaaccgaaccgaagcaacctaaaccaatctagtttggtttggttctcggtttttaattttgagatccaaagaaccgatgaaccaaatcgatgctaa 29109160  T
Q  164 ccacattgatcattttattaatagcatccctcctcgcccacatttacgtttaggcctaaatttaaagtccaacgtaaaataattcttcatccatttactt 263  Q
    ||    |   ||||||| |||||  ||||| |||| | |||| |||   ||| ||  ||| |||||||||||| ||||||| | ||| || |||| ||||    
T  29109159 ccttccttcccattttagtaatattatcccccctcacacacaattataattaagctcaaaattaaagtccaacataaaatactccttaattcattcactt 29109060  T
Q  264 tctccgatcatcatctcat 282  Q
    ||||| |||||||||||||    
T  29109059 tctcctatcatcatctcat 29109041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 158
Target Start/End: Complemental strand, 3919963 - 3919858
Alignment:
Q  54 gtttggtttgattcaaaaccgaaccgaatcaaccgaaattgacctagtttggttcggttctcagttttt-attttgaaattcaaagaaccgataaaccga 152  Q
    |||||||||| ||||||||||||||||| ||| | |||  || ||||||||||| |||||| | ||||| ||||||| ||  ||||||||||| ||||||    
T  3919963 gtttggtttggttcaaaaccgaaccgaaccaaactaaaccgatctagtttggtttggttcttaatttttaattttgagatctaaagaaccgatgaaccga 3919864  T
Q  153 atcgat 158  Q
    | ||||    
T  3919863 accgat 3919858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 97 - 158
Target Start/End: Original strand, 5526337 - 5526399
Alignment:
Q  97 ctagtttggttcggttctcagttttt-attttgaaattcaaagaaccgataaaccgaatcgat 158  Q
    |||||||||||||||||||||||||| ||||||| || |||||||| ||| ||||||| ||||    
T  5526337 ctagtttggttcggttctcagtttttaattttgagatccaaagaacagatgaaccgaaccgat 5526399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 63 - 152
Target Start/End: Original strand, 38607053 - 38607143
Alignment:
Q  63 gattcaaaaccgaaccgaatcaaccgaaattgacctagtttggttcggttctcagttttt-attttgaaattcaaagaaccgataaaccga 152  Q
    ||||||||||||||||||| ||| | ||| |||||| |||||||||||||||  |||||| ||||||| || || | ||||||| ||||||    
T  38607053 gattcaaaaccgaaccgaaccaatctaaactgaccttgtttggttcggttcttggtttttcattttgagatccataaaaccgatgaaccga 38607143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 213 - 278
Target Start/End: Original strand, 28199816 - 28199881
Alignment:
Q  213 ttaggcctaaatttaaagtccaacgtaaaataattcttcatccatttactttctccgatcatcatc 278  Q
    ||||||||||| |||||||||||| || |||| | ||| ||||||| ||||||||| |||||||||    
T  28199816 ttaggcctaaaattaaagtccaacatataatactccttaatccattcactttctcccatcatcatc 28199881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 56 - 158
Target Start/End: Original strand, 27866691 - 27866794
Alignment:
Q  56 ttggtttgattcaaaaccgaaccgaatcaaccgaaattgacctagtttggttcggttctcagttttt-attttgaaattcaaagaaccgataaaccgaat 154  Q
    |||||| | ||||||||||||| ||| ||||  ||||||| | ||||||||||| ||||| |||||| ||||||| || | |||||||||| ||| |||     
T  27866691 ttggttcggttcaaaaccgaactgaaccaacttaaattgatcgagtttggttcgattctcggtttttaattttgagatcccaagaaccgatgaactgaac 27866790  T
Q  155 cgat 158  Q
    ||||    
T  27866791 cgat 27866794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 56 - 154
Target Start/End: Original strand, 37630410 - 37630509
Alignment:
Q  56 ttggtttgattcaaaaccgaaccgaatcaaccgaaattgacctagtttggttcggttctcagttttt-attttgaaattcaaagaaccgataaaccgaat 154  Q
    |||||||| ||||||| ||| || || ||||| ||| ||| |||||||||||| |||||| |||||| ||||||| || ||| |||||| | ||||||||    
T  37630410 ttggtttggttcaaaatcgatccaaaccaacctaaactgatctagtttggttcagttctcggtttttaattttgagatccaatgaaccggtgaaccgaat 37630509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 158
Target Start/End: Original strand, 9505094 - 9505199
Alignment:
Q  54 gtttggtttgattcaaaaccgaaccgaatcaaccgaaattgacctagtttggttcggttctcag-tttttattttgaaattcaaagaaccgataaaccga 152  Q
    |||||||| ||||||||| ||||||||| ||||| |||  ||  |||||||||||||||||  | |||| |||||||||| |||  ||||||||||||||    
T  9505094 gtttggttcgattcaaaatcgaaccgaaccaaccaaaaccgatatagtttggttcggttctaggattttaattttgaaatccaacaaaccgataaaccga 9505193  T
Q  153 atcgat 158  Q
    | ||||    
T  9505194 accgat 9505199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 65 - 158
Target Start/End: Complemental strand, 3767753 - 3767659
Alignment:
Q  65 ttcaaaaccgaaccgaatcaaccgaaattgacctagtttggttcggttctcag-tttttattttgaaattcaaagaaccgataaaccgaatcgat 158  Q
    ||||||||||||||||| ||| | |||  || ||||||||||| ||||||| | |||||||||||| || ||| |||||||| ||||||| ||||    
T  3767753 ttcaaaaccgaaccgaaccaatctaaaccgatctagtttggtttggttctcggttttttattttgagatccaatgaaccgatgaaccgaaccgat 3767659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 54 - 282
Target Start/End: Original strand, 32321877 - 32322107
Alignment:
Q  54 gtttggtttgattcaaaaccgaaccgaatcaaccgaaattgacctagtttggttcggttctcagtttttattttgaa-attcaaagaaccgataaaccga 152  Q
    |||||||| | || |||| | ||||||||||||  |||  || ||| ||||||||||||||| ||||||| ||| || |||||| ||||||||||||| |    
T  32321877 gtttggttcggtttaaaaacaaaccgaatcaacataaaccgatctaatttggttcggttctcggtttttaattttaagattcaatgaaccgataaaccaa 32321976  T
Q  153 atcgataataaccacattgatcattttattaatagcatccctcctcgcccacatttacgtttaggcctaaat-ttaaagtccaacgtaaaataattcttc 251  Q
    | | ||  ||||| || |   ||||||| |||||  ||| |||||| | |||| ||| | |||   || ||  |||||||||||| ||||||| | |||     
T  32321977 accaatgctaacctcactctccattttagtaatattatctctcctcacacacacttatgattaaaactcaagattaaagtccaacataaaatactcctta 32322076  T
Q  252 atccatttactttctccgatcatcatctcat 282  Q
    || |||||||||||||| |||||||||||||    
T  32322077 attcatttactttctcccatcatcatctcat 32322107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 54 - 158
Target Start/End: Complemental strand, 16570970 - 16570865
Alignment:
Q  54 gtttggtttgattcaaaaccgaaccgaatcaaccgaaattgacctagtttggttcggttctc-agtttttattttgaaattcaaagaaccgataaaccga 152  Q
    |||||||||| |||||||||||||| || ||||| |||  || ||| ||||||| ||||||| | |||| ||||||| || |||||||||||| ||| ||    
T  16570970 gtttggtttggttcaaaaccgaaccaaaccaacctaaaccgatctaatttggttaggttctcgatttttaattttgagatccaaagaaccgatgaactga 16570871  T
Q  153 atcgat 158  Q
    | ||||    
T  16570870 accgat 16570865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 145
Target Start/End: Complemental strand, 3555483 - 3555434
Alignment:
Q  97 ctagtttggttcggttctcagttttta-ttttgaaattcaaagaaccgat 145  Q
    ||||||||||| |||||| | |||||| ||||||||||||||||||||||    
T  3555483 ctagtttggtttggttcttaatttttaattttgaaattcaaagaaccgat 3555434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 158
Target Start/End: Complemental strand, 7239387 - 7239282
Alignment:
Q  54 gtttggtttgattcaaaaccgaaccgaatcaaccgaaattgacctagtttggttcggttctcag-tttttattttgaaattcaaagaaccgataaaccga 152  Q
    |||||||||| ||||||||||||||||| ||||  |||| ||  ||||||||||||||||| || |||||||||| | || | |||| |||||||| |||    
T  7239387 gtttggtttggttcaaaaccgaaccgaaccaacttaaatcgagttagtttggttcggttcttagttttttattttaagatcccaagatccgataaatcga 7239288  T
Q  153 atcgat 158  Q
    | ||||    
T  7239287 accgat 7239282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 158
Target Start/End: Complemental strand, 7244563 - 7244458
Alignment:
Q  54 gtttggtttgattcaaaaccgaaccgaatcaaccgaaattgacctagtttggttcggttctcag-tttttattttgaaattcaaagaaccgataaaccga 152  Q
    |||||||||| ||||||||||||||||| ||||  |||| ||  ||||||||||||||||| || |||||||||| | || | |||| |||||||| |||    
T  7244563 gtttggtttggttcaaaaccgaaccgaaccaacttaaatcgagttagtttggttcggttcttagttttttattttaagatcccaagatccgataaatcga 7244464  T
Q  153 atcgat 158  Q
    | ||||    
T  7244463 accgat 7244458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 54 - 158
Target Start/End: Complemental strand, 53393263 - 53393158
Alignment:
Q  54 gtttggtttgattcaaaaccgaaccgaatcaaccgaaattgacctagtttggttcggttctcagttt-ttattttgaaattcaaagaaccgataaaccga 152  Q
    |||||||| | || ||||| |||||||| ||||| |||  || ||||||||||||||||||| |||| | | |||||||| ||| |||||||| ||||||    
T  53393263 gtttggttcggtttaaaactgaaccgaaccaacctaaaccgatctagtttggttcggttctcggtttataactttgaaatccaatgaaccgatgaaccga 53393164  T
Q  153 atcgat 158  Q
    | ||||    
T  53393163 accgat 53393158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 335
Target Start/End: Complemental strand, 8606082 - 8605965
Alignment:
Q  213 ttaggcctaaatttaaagtccaacgtaaaataattcttcatccatttactttctccgatcatcatctcattttatctcatcattcaaactttattttatt 312  Q
    ||||||| ||| |||||||||||| ||||||| | ||| || |||| ||||||||| ||||     |||||| ||||||||| ||||||| ||||| |||    
T  8606082 ttaggcccaaaattaaagtccaacataaaatactccttaattcattcactttctcctatca-----tcatttcatctcatcactcaaactctatttcatt 8605988  T
Q  313 tgtactaaaaaagagaaacccta 335  Q
    | | ||  |||| ||||||||||    
T  8605987 tcttctggaaaaaagaaacccta 8605965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 144
Target Start/End: Original strand, 42141327 - 42141417
Alignment:
Q  55 tttggtttgattcaaaaccgaaccgaatcaaccgaaattgacctagtttggttcggttctcagttttt-attttgaaattcaaagaaccga 144  Q
    ||||||| | ||||||||||||| |||  |||| |||| || ||| ||||||||||||||  |||||| ||||||| || |||||||||||    
T  42141327 tttggttcggttcaaaaccgaactgaacaaacctaaatcgatctactttggttcggttcttggtttttaattttgagatccaaagaaccga 42141417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 153
Target Start/End: Original strand, 513031 - 513131
Alignment:
Q  54 gtttggtttgattcaaaaccgaaccgaatcaaccgaaattgacctagtttggttcggttctcagttttta-ttttgaaattcaaagaaccgataaaccga 152  Q
    |||||||| | ||||||||| ||||||| ||||| |||  || |||||||| |||| |||| | |||||| |||||| || |||  ||||||||||||||    
T  513031 gtttggttcggttcaaaaccaaaccgaaccaacctaaaccgatctagtttgattcgattcttaatttttaattttgagatccaataaaccgataaaccga 513130  T
Q  153 a 153  Q
    |    
T  513131 a 513131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University