View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14809_low_6 (Length: 348)
Name: NF14809_low_6
Description: NF14809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14809_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 343
Target Start/End: Complemental strand, 24877417 - 24877074
Alignment:
| Q |
1 |
catattttcaaatcacctatgttagggtttctcccattcgttgtcatggaaacatgttgcccatgccttctccctctaacatcaagttgaatcttgaatt |
100 |
Q |
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| T |
24877417 |
catattttcaaatcacctatgttagggtttctcccattcgttgtcatggaaacatgttgcccatgccttctccctctaacatcaagttgaatcttgaatt |
24877318 |
T |
|
| Q |
101 |
tgaaaagaaatataacagnnnnnnnncaactcaagttgaacttaacatataacataactataaagtttagattatttttactctcgattttgtagggttg |
200 |
Q |
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| T |
24877317 |
tgaaaagaaatataacagttttttttcaactcaagttgaacttaacataaaacataactataaagtttagattatttttactctcgattttgtagggttg |
24877218 |
T |
|
| Q |
201 |
gaagtgatgattagatcaaagtttaagaataaaagtagaatcaatagtcatttttgttcataaattatcactctcttatcaatttggttcataaactatc |
300 |
Q |
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| T |
24877217 |
gaagtgatgattagatcaaagtttaagaataaaagtagaatcaatagtcatttttgttcaaaaactatcactctcttatcaatttggttcttaaactatc |
24877118 |
T |
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| Q |
301 |
aaaatcaactaaaatatccat-aaactatgctatatcattcatc |
343 |
Q |
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| T |
24877117 |
aaattcaactaaaatatccataaaactatactatatcattcatc |
24877074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 314
Target Start/End: Original strand, 40663489 - 40663557
Alignment:
| Q |
246 |
agtcatttttgttcataaattatcactctcttatcaatttggttcataaactatcaaaatcaactaaaa |
314 |
Q |
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| T |
40663489 |
agtcaatttagtccataaactatcgctctctcaccaatttggttcctaaactattaaaatcaactaaaa |
40663557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 261 - 328
Target Start/End: Original strand, 47148898 - 47148963
Alignment:
| Q |
261 |
taaattatcactctcttatcaatttggttcataaactatcaaaatcaactaaaatatccataaactat |
328 |
Q |
| |
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||||||| ||||||||||| ||||| |||| |||||||| ||||||| ||||| |||| |||||||| |
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| T |
47148898 |
taaattaccactctcttattaattttgttcttaaactattaaaatca--taaaagatccttaaactat |
47148963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 261 - 329
Target Start/End: Complemental strand, 421838 - 421770
Alignment:
| Q |
261 |
taaattatcactctcttatcaatttggttcataaactatcaaaatcaactaaaatatccataaactatg |
329 |
Q |
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|||| ||||||||||| | |||||| || | |||||||| |||||||||||| | |||| ||||||||| |
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| T |
421838 |
taaactatcactctctcaccaatttagtccctaaactattaaaatcaactaagagatccctaaactatg |
421770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 284 - 324
Target Start/End: Complemental strand, 8430733 - 8430693
Alignment:
| Q |
284 |
ttggttcataaactatcaaaatcaactaaaatatccataaa |
324 |
Q |
| |
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||||| |||||||||| ||||||||||||||| |||||||| |
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| T |
8430733 |
ttggtccataaactattaaaatcaactaaaatgtccataaa |
8430693 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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