View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14809_low_7 (Length: 334)
Name: NF14809_low_7
Description: NF14809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14809_low_7 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 177; Significance: 2e-95; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 15 - 219
Target Start/End: Complemental strand, 5585075 - 5584871
Alignment:
| Q |
15 |
gagatgaaaaaacagtgatgagaaactggtgagcaaacgtaatattaaagattgtactaatatagttagaagttccaaatgacgtgtgatagtagagagt |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |
|
|
| T |
5585075 |
gagatgaaaaaacagtgatgagaaactggtgagcaaacgtaatattaaagattgtactaatatacttaaaagttccaaatgacgtgtgatagtagagagt |
5584976 |
T |
|
| Q |
115 |
aaaaatatggtcattctagtcccacatcgctagcaaagaaacataacatatgaacttgttctatatagtataatacaatacagcatacgaaacatcaact |
214 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||| |||||||||||| |
|
|
| T |
5584975 |
aaaaatatggtcattctagtccaacatcgctagcaaagaaacataacatatgaacttgttctatataatataataaaatacggcatatgaaacatcaact |
5584876 |
T |
|
| Q |
215 |
aacgt |
219 |
Q |
| |
|
||||| |
|
|
| T |
5584875 |
aacgt |
5584871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 98 - 181
Target Start/End: Original strand, 12074242 - 12074323
Alignment:
| Q |
98 |
gtgtgatagtagagagtaaaaatatggtcattctagtcccacatcgctagcaaagaaacataacatatgaacttgttctatata |
181 |
Q |
| |
|
|||||| |||||||||||||||||||| || |||||||| || ||||| |||||||||||||| |||| |||||||||||| |
|
|
| T |
12074242 |
gtgtgaaagtagagagtaaaaatatggc--ttttagtcccatattgctaggaaagaaacataacacgtgaagttgttctatata |
12074323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 166
Target Start/End: Original strand, 1085675 - 1085724
Alignment:
| Q |
116 |
aaaatatggtcattctagtcccacatcgctagcaaagaaacataacatatg |
166 |
Q |
| |
|
||||||||||| || ||||||||||| ||||||||||||||||||||||| |
|
|
| T |
1085675 |
aaaatatggtcttt-tagtcccacatttctagcaaagaaacataacatatg |
1085724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 181
Target Start/End: Original strand, 12053758 - 12053856
Alignment:
| Q |
81 |
tagaagttccaaatgacgtgtgatagtagagagtaaaaatatggtcattctagtcccacatcgctagcaaagaaacataacatatgaacttgttctatat |
180 |
Q |
| |
|
||||||| |||| ||| |||||| ||||||||||| |||||||| || |||||||| || ||| |||||||||||||| | |||| || |||||||| |
|
|
| T |
12053758 |
tagaagtgccaagtgaggtgtgaaagtagagagtataaatatgg--cttttagtcccatattgcttgcaaagaaacataatacgtgaagtttttctatat |
12053855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University