View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14809_low_8 (Length: 319)
Name: NF14809_low_8
Description: NF14809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14809_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 8 - 301
Target Start/End: Complemental strand, 34478552 - 34478241
Alignment:
| Q |
8 |
tgagataggatatttttattgatcaagaacaatattgaatgagattcaaattgatgaacaagtgtttaatagatttgttctagatcgtatcaaacaaatt |
107 |
Q |
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| T |
34478552 |
tgagataggatatttttattgatcaagaacaatattgaatgagattcaaattgatgaacaagtgtttaatagatttgttctagatcgtatctaacaaatt |
34478453 |
T |
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| Q |
108 |
gagat-------------atggttcctaaacttacaaggtttattggcgaaactggatattcaaccaatgaaaatatttccagatatatactacaaattt |
194 |
Q |
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| T |
34478452 |
gagatcccaagagggactatggttcctaaacttacaaggtttattggcgatactggatattcaaccaatgaaaatatttccagatatatactacaaattt |
34478353 |
T |
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| Q |
195 |
gggagaacttgttcat-----aggattgaaaatagaatgtttacccagttcattgacaaagaatgctttcacttggttttcaatgttaaaactcaatcat |
289 |
Q |
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| T |
34478352 |
gggagaacttgttcatgatgaaggattgaaaatagaatgtttccccagttcattgacaaagaatgctttcacttggttttcaatgttaaaactcaatcat |
34478253 |
T |
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| Q |
290 |
gtgtataattgg |
301 |
Q |
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| T |
34478252 |
gtgtataattgg |
34478241 |
T |
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