View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1480_high_18 (Length: 325)
Name: NF1480_high_18
Description: NF1480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1480_high_18 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 227; Significance: 1e-125; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 17 - 307
Target Start/End: Complemental strand, 33223781 - 33223490
Alignment:
| Q |
17 |
aagagaggagttgaaaagtctggtgcagtgacagtagcacactattatgctacttgtagagattgnnnnnnnnataatgatgccgggattttttcnnnnn |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |
|
|
| T |
33223781 |
aagagaggagttgaaaagtctggtgcagtgacagtagcacactattatgctacttgtacagattgttttttttataatgatgccgggattttttcaaaaa |
33223682 |
T |
|
| Q |
117 |
nn-gttgatgtctggctttcaacggaagtagttattactgtgttaaacaataatggtttggatgtttcaatgaagggtccttttgaacacccttctatga |
215 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33223681 |
aaagttgatgtcgggctttcaacggaagtagttattactgtattaaacaataatggtttggatgtttcaatgaagggtccttttgaacacccttctatga |
33223582 |
T |
|
| Q |
216 |
cattgcttcaaatgtttcaacaagtatctacaacaaggatttggaattggaaggcatgccctgatagtggtgctgtaactcaaagaaggcag |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33223581 |
cattgcttcaaatgtttcaacaagtatctacaacaaggatttggaattggaaggcatgccctgatagtggtgctgtaactcaaagaaggcag |
33223490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 175 - 307
Target Start/End: Complemental strand, 33226543 - 33226405
Alignment:
| Q |
175 |
ggatgtttcaatgaagggtccttttgaacacccttctatgaca-----ttgcttcaaatgtttcaacaagtatctacaacaaggatttggaattggaagg |
269 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||| || | |||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
33226543 |
ggatgtttcaatgaagggtccttctgaacacccttctaagaaaagaaattgcttcaaatgtttcaacaagtatctacaacaaggatttggaagtggaagg |
33226444 |
T |
|
| Q |
270 |
catgccctgatagtggt-gctgtaactcaaagaaggcag |
307 |
Q |
| |
|
||||||||||||||||| | ||||||| ||||||||||| |
|
|
| T |
33226443 |
catgccctgatagtggtggttgtaactgaaagaaggcag |
33226405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 167 - 273
Target Start/End: Original strand, 33245920 - 33246026
Alignment:
| Q |
167 |
aatggtttggatgtttcaatgaagggtccttttgaacacccttctatgacattgcttcaaatgtttcaacaagtatctacaacaaggatttggaattgga |
266 |
Q |
| |
|
|||| |||||||||||||||||||| ||||| ||||||||||||| || ||| |||||||||||| |||||||||||| |||| |||||||||| |||| |
|
|
| T |
33245920 |
aatgatttggatgtttcaatgaaggatccttatgaacacccttctttggtattccttcaaatgtttgaacaagtatctagaacatggatttggaagtgga |
33246019 |
T |
|
| Q |
267 |
aggcatg |
273 |
Q |
| |
|
|||||| |
|
|
| T |
33246020 |
cggcatg |
33246026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 12 - 68
Target Start/End: Complemental strand, 33226720 - 33226664
Alignment:
| Q |
12 |
agagaaagagaggagttgaaaagtctggtgcagtgacagtagcacactattatgcta |
68 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
33226720 |
agagaaagagaggagttgaaaagtctggtgcagtgagagtagcacactattatgcta |
33226664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 139 - 174
Target Start/End: Complemental strand, 33226593 - 33226558
Alignment:
| Q |
139 |
ggaagtagttattactgtgttaaacaataatggttt |
174 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| |
|
|
| T |
33226593 |
ggaagtagttattactgtggtaaacaataatggttt |
33226558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University