View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1480_high_3 (Length: 541)

Name: NF1480_high_3
Description: NF1480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1480_high_3
NF1480_high_3
[»] chr6 (4 HSPs)
chr6 (315-477)||(33596362-33596524)
chr6 (45-289)||(33596128-33596364)
chr6 (380-477)||(8877826-8877922)
chr6 (381-477)||(14958902-14958998)
[»] chr3 (2 HSPs)
chr3 (330-461)||(27437931-27438062)
chr3 (367-456)||(9775149-9775237)
[»] chr8 (2 HSPs)
chr8 (330-478)||(15327848-15327995)
chr8 (330-478)||(15508217-15508364)
[»] chr4 (1 HSPs)
chr4 (330-461)||(4103233-4103364)
[»] chr2 (1 HSPs)
chr2 (330-477)||(27513685-27513831)
[»] chr7 (2 HSPs)
chr7 (478-529)||(13325278-13325329)
chr7 (367-477)||(48629425-48629535)
[»] chr5 (2 HSPs)
chr5 (478-529)||(5667151-5667202)
chr5 (478-521)||(39739795-39739838)
[»] chr1 (4 HSPs)
chr1 (268-359)||(1390490-1390584)
chr1 (382-477)||(22916284-22916379)
chr1 (402-477)||(1390393-1390468)
chr1 (367-477)||(21859703-21859813)
[»] scaffold0186 (1 HSPs)
scaffold0186 (380-477)||(2723-2820)
[»] scaffold0003 (1 HSPs)
scaffold0003 (386-474)||(111003-111091)


Alignment Details
Target: chr6 (Bit Score: 91; Significance: 8e-44; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 315 - 477
Target Start/End: Original strand, 33596362 - 33596524
Alignment:
Q  315 gagcgtagatgaaattacaaagcgccttttaattcattaaacaaaaacatatgcgacggttgatccaaacagtcgcaacaaccgttgcaaatgtgcagtt 414  Q
    ||||||| |||||||||||||||||||||||| |||||||  || || |  |||||| ||||| ||||||||| |||||||||||||||||||| || ||    
T  33596362 gagcgtaaatgaaattacaaagcgccttttaagtcattaacaaagaaaacttgcgacagttgacccaaacagttgcaacaaccgttgcaaatgttcattt 33596461  T
Q  415 tgaggcccttacaaggtaggggtcgcagatgaagtgtcgcaatttgctgaatttcttgtagtg 477  Q
    ||||||  ||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||    
T  33596462 tgaggcagttataaggtaggggtcgcagatgaagtgtcacaatttgctgattttcttgtagtg 33596524  T

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Target: chr6; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 45 - 289
Target Start/End: Original strand, 33596128 - 33596364
Alignment:
Q  45 gcgagtgtgcgagagtgagaagccataacgattgagaggaagcaacactgatacgaatctctgcgatttgtgtacgatttcgatttcgaaattcgaaccg 144  Q
    |||| ||| |||| |||||||| ||||| ||||||||||||||| ||||||||||||||| ||||||||| | |      ||||||||| ||| |||||     
T  33596128 gcgaatgtccgagtgtgagaaggcataatgattgagaggaagcatcactgatacgaatctttgcgatttgggaa------cgatttcgacattagaacca 33596221  T
Q  145 gtgttagagaaactagagtgagttgttgaacgagtgaggaaggtaaacgaggaactggagtgagttggtgaatcga--atctcaacgagtgaagtttgtc 242  Q
    |||  |||| |||| |||||||||| |||||||| | ||||||||||||| ||||||| | ||||||||||| |||  | ||    ||||||||||| |     
T  33596222 gtgaaagaggaactggagtgagttggtgaacgagaggggaaggtaaacgatgaactggtgggagttggtgaa-cgaggaact---ggagtgaagtttttg 33596317  T
Q  243 aagtttgagagtgagatggagatgtgggggttttgggggaaggtgag 289  Q
    | ||||||||||||||||||||| ||||||||||||||||| |||||    
T  33596318 atgtttgagagtgagatggagatttgggggttttgggggaaagtgag 33596364  T

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Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 380 - 477
Target Start/End: Complemental strand, 8877922 - 8877826
Alignment:
Q  380 caaacagtcgcaacaaccgttgcaaatgtgcagtttgaggcccttacaaggtaggggtcgcagatgaagtgtcgcaatttgctgaatttcttgtagtg 477  Q
    ||||||| ||||||||| ||||||||  |||| ||||||||  || ||||| | |||||||||||||||||||||||||| || | ||||||||||||    
T  8877922 caaacagccgcaacaactgttgcaaaaatgca-tttgaggcagttgcaaggcatgggtcgcagatgaagtgtcgcaatttccttattttcttgtagtg 8877826  T

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Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 381 - 477
Target Start/End: Complemental strand, 14958998 - 14958902
Alignment:
Q  381 aaacagtcgcaacaaccgttgcaaatgtgcagtttgaggcccttacaaggtaggggtcgcagatgaagtgtcgcaatttgctgaatttcttgtagtg 477  Q
    |||||| ||||||||||||||||||  |||| ||||||||  ||  ||| || |||||||||||||||||||||||  ||| |  ||||||||||||    
T  14958998 aaacagccgcaacaaccgttgcaaaaatgcattttgaggcagttgtaagttaagggtcgcagatgaagtgtcgcaaaatgcagtttttcttgtagtg 14958902  T

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Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 330 - 461
Target Start/End: Complemental strand, 27438062 - 27437931
Alignment:
Q  330 tacaaagcgccttttaattcattaaacaaaaacatatgcgacggttgatccaaacagtcgcaacaaccgttgcaaatgtgcagtttgaggcccttacaag 429  Q
    ||||| |||| || ||||| |||||||||||| |  |||||||||| | || ||||| ||||||||| ||||||||  |||| ||||||||  || ||||    
T  27438062 tacaacgcgcattctaattaattaaacaaaaaaacctgcgacggttcaccctaacagccgcaacaactgttgcaaaaatgcactttgaggcagttgcaag 27437963  T
Q  430 gtaggggtcgcagatgaagtgtcgcaatttgc 461  Q
    ||| || |||||||||||||||||||||||||    
T  27437962 gtaaggatcgcagatgaagtgtcgcaatttgc 27437931  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 367 - 456
Target Start/End: Complemental strand, 9775237 - 9775149
Alignment:
Q  367 gcgacggttgatccaaacagtcgcaacaaccgttgcaaatgtgcagtttgaggcccttacaaggtaggggtcgcagatgaagtgtcgcaa 456  Q
    ||||||||| ||| |||||| |||||||||  |||||||  |||| ||||||||  ||  ||| || |||||||||||||||||||||||    
T  9775237 gcgacggttcatc-aaacagccgcaacaactattgcaaaaatgcattttgaggcggttgtaagttaagggtcgcagatgaagtgtcgcaa 9775149  T

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Target: chr8 (Bit Score: 49; Significance: 9e-19; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 330 - 478
Target Start/End: Complemental strand, 15327995 - 15327848
Alignment:
Q  330 tacaaagcgccttttaattcattaaacaaaaacatatgcgacggttgatccaaacagtcgcaacaaccgttgcaaatgtgcagtttgaggcccttacaag 429  Q
    ||||| ||||||| ||||| ||||| |||||| || |||||||||| || | ||||| ||||||||  ||||||||  |||| ||||||||  || |||     
T  15327995 tacaacgcgccttctaattaattaaccaaaaaaatctgcgacggttcatgctaacagccgcaacaat-gttgcaaaaatgcactttgaggcagttgcaaa 15327897  T
Q  430 gtaggggtcgcagatgaagtgtcgcaatttgctgaatttcttgtagtgc 478  Q
    ||| ||||||||||||||||||| |||||||| |  |||||||||||||    
T  15327896 gtaagggtcgcagatgaagtgtcacaatttgcagtttttcttgtagtgc 15327848  T

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Target: chr8; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 330 - 478
Target Start/End: Complemental strand, 15508364 - 15508217
Alignment:
Q  330 tacaaagcgccttttaattcattaaacaaaaacatatgcgacggttgatccaaacagtcgcaacaaccgttgcaaatgtgcagtttgaggcccttacaag 429  Q
    ||||| ||||||| ||||| ||||| |||||| || |||||||||| || | ||||| ||||||||  ||||||||  |||| ||||||||  || |||     
T  15508364 tacaacgcgccttctaattaattaaccaaaaaaatctgcgacggttcatgctaacagccgcaacaat-gttgcaaaaatgcactttgaggcagttgcaaa 15508266  T
Q  430 gtaggggtcgcagatgaagtgtcgcaatttgctgaatttcttgtagtgc 478  Q
    ||| ||||||||||||||||||| |||||||| |  |||||||||||||    
T  15508265 gtaagggtcgcagatgaagtgtcacaatttgcagtttttcttgtagtgc 15508217  T

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Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 330 - 461
Target Start/End: Complemental strand, 4103364 - 4103233
Alignment:
Q  330 tacaaagcgccttttaattcattaaacaaaaacatatgcgacggttgatccaaacagtcgcaacaaccgttgcaaatgtgcagtttgaggcccttacaag 429  Q
    ||||| || |||| ||||| ||||| |||||| |  |||||||||| | || ||||| ||||||||| ||||||||  |||| ||||||||  ||  |||    
T  4103364 tacaacgccccttctaattaattaaccaaaaaaacctgcgacggtttaccctaacagccgcaacaactgttgcaaaaatgcactttgaggcagttgtaag 4103265  T
Q  430 gtaggggtcgcagatgaagtgtcgcaatttgc 461  Q
    ||| ||||||||||||||||||||||||||||    
T  4103264 gtaagggtcgcagatgaagtgtcgcaatttgc 4103233  T

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Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 330 - 477
Target Start/End: Original strand, 27513685 - 27513831
Alignment:
Q  330 tacaaagcgccttttaattcattaaacaaaaacatatgcgacggttgatccaaacagtcgcaacaaccgttgcaaatgtgcagtttgaggcccttacaag 429  Q
    ||||| ||||||| ||||| ||||| |||||| || |||||||||| || | ||||| |||||||   ||||||||  |||| ||||||||  || |||     
T  27513685 tacaacgcgccttctaattaattaaccaaaaaaatctgcgacggttcatgctaacagccgcaacatt-gttgcaaaaatgcactttgaggcagttgcaaa 27513783  T
Q  430 gtaggggtcgcagatgaagtgtcgcaatttgctgaatttcttgtagtg 477  Q
    ||| |||||||||||||||||||||||||||| |  ||||||||||||    
T  27513784 gtaagggtcgcagatgaagtgtcgcaatttgcagtttttcttgtagtg 27513831  T

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Target: chr7 (Bit Score: 44; Significance: 8e-16; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 478 - 529
Target Start/End: Original strand, 13325278 - 13325329
Alignment:
Q  478 ccttcacataaaactggcatgtgttatagcccaaaattaatgcctatgaaga 529  Q
    ||||||||| ||| ||||||||||||||||||||||||||||||||||||||    
T  13325278 ccttcacatgaaattggcatgtgttatagcccaaaattaatgcctatgaaga 13325329  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 367 - 477
Target Start/End: Complemental strand, 48629535 - 48629425
Alignment:
Q  367 gcgacggttgatccaaacagtcgcaacaaccgttgcaaatgtgcagtttgaggcccttacaaggtaggggtcgcagatgaagtgtcgcaatttgctgaat 466  Q
    ||||||||| ||| |||||| ||||||||| ||||||||  |||| ||||||||  ||  ||| || |||||||||||||||||||||||  ||| |  |    
T  48629535 gcgacggttcatcaaaacagccgcaacaactgttgcaaaaatgcattttgaggcagttgtaagttaagggtcgcagatgaagtgtcgcaaaatgcagttt 48629436  T
Q  467 ttcttgtagtg 477  Q
    |||||||||||    
T  48629435 ttcttgtagtg 48629425  T

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Target: chr5 (Bit Score: 44; Significance: 8e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 478 - 529
Target Start/End: Original strand, 5667151 - 5667202
Alignment:
Q  478 ccttcacataaaactggcatgtgttatagcccaaaattaatgcctatgaaga 529  Q
    ||||||||| ||| ||||||||||||||||||||||||||||||||||||||    
T  5667151 ccttcacatgaaattggcatgtgttatagcccaaaattaatgcctatgaaga 5667202  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 478 - 521
Target Start/End: Complemental strand, 39739838 - 39739795
Alignment:
Q  478 ccttcacataaaactggcatgtgttatagcccaaaattaatgcc 521  Q
    ||||||||| |||||||||| |||||||||||||||||||||||    
T  39739838 ccttcacatgaaactggcatatgttatagcccaaaattaatgcc 39739795  T

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Target: chr1 (Bit Score: 44; Significance: 8e-16; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 268 - 359
Target Start/End: Complemental strand, 1390584 - 1390490
Alignment:
Q  268 gggggttttgggggaaggtgagaaagcggggaa-tgaaaatttgggtagag--cgtagatgaaattacaaagcgccttttaattcattaaacaaa 359  Q
    |||||||||||||||| || ||||||||||||| ||||| ||||| |||||  |||| |||||||| ||| ||||||||||||||||| ||||||    
T  1390584 gggggttttgggggaaagtaagaaagcggggaaatgaaattttggatagagagcgtaaatgaaattgcaacgcgccttttaattcatttaacaaa 1390490  T

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Target: chr1; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 382 - 477
Target Start/End: Complemental strand, 22916379 - 22916284
Alignment:
Q  382 aacagtcgcaacaaccgttgcaaatgtgcagtttgaggcccttacaaggtaggggtcgcagatgaagtgtcgcaatttgctgaatttcttgtagtg 477  Q
    ||||||||||||||||||| ||||  |||| |||||| |  ||| |||||||||||||| ||||| ||||||||| ||| ||| ||||||||||||    
T  22916379 aacagtcgcaacaaccgtttcaaaaatgcactttgagacagttataaggtaggggtcgctgatgaggtgtcgcaaattgatgattttcttgtagtg 22916284  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 402 - 477
Target Start/End: Complemental strand, 1390468 - 1390393
Alignment:
Q  402 caaatgtgcagtttgaggcccttacaaggtaggggtcgcagatgaagtgtcgcaatttgctgaatttcttgtagtg 477  Q
    |||||||||| ||||||||  ||| ||| || |||||||||||||||||||||||||||| |  ||||||||||||    
T  1390468 caaatgtgcattttgaggcagttataagttaagggtcgcagatgaagtgtcgcaatttgcagtttttcttgtagtg 1390393  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 367 - 477
Target Start/End: Original strand, 21859703 - 21859813
Alignment:
Q  367 gcgacggttgatccaaacagtcgcaacaaccgttgcaaatgtgcagtttgaggcccttacaaggtaggggtcgcagatgaagtgtcgcaatttgctgaat 466  Q
    ||||||||| ||| |||||| ||||||||| ||||||||  |||| ||||||||  ||  ||| || || ||||||||||||||||||||  ||| |  |    
T  21859703 gcgacggttcatcaaaacagccgcaacaactgttgcaaaaatgcattttgaggcagttgtaagttaaggttcgcagatgaagtgtcgcaaaatgcagttt 21859802  T
Q  467 ttcttgtagtg 477  Q
    |||||||||||    
T  21859803 ttcttgtagtg 21859813  T

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Target: scaffold0186 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 380 - 477
Target Start/End: Original strand, 2723 - 2820
Alignment:
Q  380 caaacagtcgcaacaaccgttgcaaatgtgcagtttgaggcccttacaaggtaggggtcgcagatgaagtgtcgcaatttgctgaatttcttgtagtg 477  Q
    ||||||| ||||||||| ||||||||  |||| ||||||||  ||  ||| || |||||||||||||||||||||||  ||| |  ||||||||||||    
T  2723 caaacagccgcaacaactgttgcaaaaatgcattttgaggcggttgtaagttaagggtcgcagatgaagtgtcgcaaaatgcagtttttcttgtagtg 2820  T

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Target: scaffold0003 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 386 - 474
Target Start/End: Complemental strand, 111091 - 111003
Alignment:
Q  386 gtcgcaacaaccgttgcaaatgtgcagtttgaggcccttacaaggtaggggtcgcagatgaagtgtcgcaatttgctgaatttcttgta 474  Q
    ||||||||||| ||||| ||| ||||  |||||||  ||| |||||| ||||||||  || ||||||||||  |||||| |||||||||    
T  111091 gtcgcaacaactgttgcgaatatgcacattgaggcagttataaggtaagggtcgcaattgcagtgtcgcaaaatgctgattttcttgta 111003  T

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