View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1480_high_30 (Length: 249)

Name: NF1480_high_30
Description: NF1480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1480_high_30
NF1480_high_30
[»] chr2 (3 HSPs)
chr2 (18-125)||(6049783-6049890)
chr2 (142-237)||(6049630-6049725)
chr2 (158-237)||(26661229-26661308)
[»] chr4 (2 HSPs)
chr4 (18-125)||(13893826-13893933)
chr4 (142-237)||(13893991-13894086)
[»] chr1 (3 HSPs)
chr1 (18-125)||(44306000-44306107)
chr1 (142-237)||(44305847-44305942)
chr1 (158-229)||(29845345-29845416)
[»] chr6 (2 HSPs)
chr6 (158-237)||(21481147-21481226)
chr6 (157-237)||(19700896-19700976)
[»] scaffold0586 (1 HSPs)
scaffold0586 (157-237)||(9327-9407)
[»] chr7 (2 HSPs)
chr7 (158-237)||(13331864-13331943)
chr7 (158-237)||(13342779-13342858)
[»] chr5 (1 HSPs)
chr5 (158-237)||(5672335-5672414)
[»] chr3 (1 HSPs)
chr3 (158-237)||(15762307-15762386)
[»] chr8 (2 HSPs)
chr8 (157-237)||(10637357-10637437)
chr8 (157-237)||(32718157-32718237)
[»] scaffold0500 (1 HSPs)
scaffold0500 (201-237)||(358-394)


Alignment Details
Target: chr2 (Bit Score: 104; Significance: 6e-52; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 18 - 125
Target Start/End: Complemental strand, 6049890 - 6049783
Alignment:
Q  18 ggaatgtttagcgggaataggagttcacatagaaagaaaagcgggaattgcaggggcataaatggctttttaaatagatcatgggtttacatttcctggg 117  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6049890 ggaatgtttagcgggaataggagttcacagagaaagaaaagcgggaattgcaggggcataaatggctttttaaatagatcatgggtttacatttcctggg 6049791  T
Q  118 aataaaag 125  Q
    ||||||||    
T  6049790 aataaaag 6049783  T

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Target: chr2; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 142 - 237
Target Start/End: Complemental strand, 6049725 - 6049630
Alignment:
Q  142 gaacgtgggggagctgctttcctgggaaaaatgtattcctgggcatatttttgtttttcccatctaccaaacaaagcaatctttaattccagcctt 237  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  6049725 gaacgtgggggagctgctttcctgggaaaaatgtattcctaggcatatttttgtttttcccatctaccaaacatagcaatctttaattccagcctt 6049630  T

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Target: chr2; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 158 - 237
Target Start/End: Complemental strand, 26661308 - 26661229
Alignment:
Q  158 ctttcctgggaaaaatgtattcctgggcatatttttgtttttcccatctaccaaacaaagcaatctttaattccagcctt 237  Q
    |||||||||||||||||||||||| ||||||||| |||| |||||||||||||||||||||||| || ||||||||||||    
T  26661308 ctttcctgggaaaaatgtattccttggcatatttgtgttattcccatctaccaaacaaagcaatattcaattccagcctt 26661229  T

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Target: chr4 (Bit Score: 92; Significance: 8e-45; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 18 - 125
Target Start/End: Original strand, 13893826 - 13893933
Alignment:
Q  18 ggaatgtttagcgggaataggagttcacatagaaagaaaagcgggaattgcaggggcataaatggctttttaaatagatcatgggtttacatttcctggg 117  Q
    ||||||||||||||||| ||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  13893826 ggaatgtttagcgggaagaggagttcacagagaaagaaaagcgagaattgcaggggcataaatggctttttaaatagatcatgggtttacattttctggg 13893925  T
Q  118 aataaaag 125  Q
    ||||||||    
T  13893926 aataaaag 13893933  T

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Target: chr4; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 142 - 237
Target Start/End: Original strand, 13893991 - 13894086
Alignment:
Q  142 gaacgtgggggagctgctttcctgggaaaaatgtattcctgggcatatttttgtttttcccatctaccaaacaaagcaatctttaattccagcctt 237  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13893991 gaacgtgggggagctgctttcctgggaaaaatgtattcctaggcatatttttgtttttcccatctaccaaacaaagcaatctttaattccagcctt 13894086  T

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Target: chr1 (Bit Score: 92; Significance: 8e-45; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 18 - 125
Target Start/End: Complemental strand, 44306107 - 44306000
Alignment:
Q  18 ggaatgtttagcgggaataggagttcacatagaaagaaaagcgggaattgcaggggcataaatggctttttaaatagatcatgggtttacatttcctggg 117  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||    
T  44306107 ggaatgtttagcgggaataggagttcacagagaaagaaaagcgggaattgcaggggcataaatggctttttaaatagatcatgggtttatatttcctagg 44306008  T
Q  118 aataaaag 125  Q
    | ||||||    
T  44306007 actaaaag 44306000  T

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Target: chr1; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 142 - 237
Target Start/End: Complemental strand, 44305942 - 44305847
Alignment:
Q  142 gaacgtgggggagctgctttcctgggaaaaatgtattcctgggcatatttttgtttttcccatctaccaaacaaagcaatctttaattccagcctt 237  Q
    |||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44305942 gaacgtgggggagctgctttcctgggaaaaatgtattcttaggcatatttttgtttttcccatctaccaaacaaagcaatctttaattccagcctt 44305847  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 229
Target Start/End: Complemental strand, 29845416 - 29845345
Alignment:
Q  158 ctttcctgggaaaaatgtattcctgggcatatttttgtttttcccatctaccaaacaaagcaatctttaatt 229  Q
    |||||||| | ||||| |||||||  ||||||||| ||| |||| ||||||||||||||| ||| |||||||    
T  29845416 ctttcctgagtaaaatttattcctaagcatattttggttgttccaatctaccaaacaaaggaatatttaatt 29845345  T

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Target: chr6 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 158 - 237
Target Start/End: Complemental strand, 21481226 - 21481147
Alignment:
Q  158 ctttcctgggaaaaatgtattcctgggcatatttttgtttttcccatctaccaaacaaagcaatctttaattccagcctt 237  Q
    |||||||| ||||||||||||||| || |||||| |||| |||||||||||||||||||||||| || ||||||||||||    
T  21481226 ctttcctgagaaaaatgtattccttggtatatttgtgttattcccatctaccaaacaaagcaatattcaattccagcctt 21481147  T

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Target: chr6; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 157 - 237
Target Start/End: Complemental strand, 19700976 - 19700896
Alignment:
Q  157 gctttcctgggaaaaatgtattcctgggcatatttttgtttttcccatctaccaaacaaagcaatctttaattccagcctt 237  Q
    ||||||||||||||| ||||||||||| ||||||| |||  ||||||  |||||||||||| ||| |||||||||||||||    
T  19700976 gctttcctgggaaaattgtattcctggacatatttgtgtggttcccacttaccaaacaaaggaatgtttaattccagcctt 19700896  T

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Target: scaffold0586 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0586
Description:

Target: scaffold0586; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 157 - 237
Target Start/End: Complemental strand, 9407 - 9327
Alignment:
Q  157 gctttcctgggaaaaatgtattcctgggcatatttttgtttttcccatctaccaaacaaagcaatctttaattccagcctt 237  Q
    ||||||||||||||| || |||||||| ||||||| |||  |||||| ||||||||||||| ||| |||||||||| ||||    
T  9407 gctttcctgggaaaattgcattcctggacatatttgtgtggttcccacctaccaaacaaaggaatgtttaattccaacctt 9327  T

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Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 158 - 237
Target Start/End: Original strand, 13331864 - 13331943
Alignment:
Q  158 ctttcctgggaaaaatgtattcctgggcatatttttgtttttcccatctaccaaacaaagcaatctttaattccagcctt 237  Q
    ||||||||  |||||||||||||||||||| ||| |||  ||||||||||||||| |||| ||| || ||||||||||||    
T  13331864 ctttcctgaaaaaaatgtattcctgggcatttttgtgtggttcccatctaccaaataaagaaatattcaattccagcctt 13331943  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 158 - 237
Target Start/End: Original strand, 13342779 - 13342858
Alignment:
Q  158 ctttcctgggaaaaatgtattcctgggcatatttttgtttttcccatctaccaaacaaagcaatctttaattccagcctt 237  Q
    ||||||||  ||||||||||||||| |||| ||| |||  ||||||||||||||| |||| ||| || ||||||||||||    
T  13342779 ctttcctgaaaaaaatgtattcctgagcatttttgtgtggttcccatctaccaaataaagaaatattcaattccagcctt 13342858  T

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Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 158 - 237
Target Start/End: Original strand, 5672335 - 5672414
Alignment:
Q  158 ctttcctgggaaaaatgtattcctgggcatatttttgtttttcccatctaccaaacaaagcaatctttaattccagcctt 237  Q
    ||||||||| ||||||||||||||| |||| ||| |||  ||||||||||||||| |||| ||| || ||||||||||||    
T  5672335 ctttcctggaaaaaatgtattcctgagcatttttgtgtggttcccatctaccaaataaagaaatattcaattccagcctt 5672414  T

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Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 158 - 237
Target Start/End: Original strand, 15762307 - 15762386
Alignment:
Q  158 ctttcctgggaaaaatgtattcctgggcatatttttgtttttcccatctaccaaacaaagcaatctttaattccagcctt 237  Q
    |||||||||||||||||||||||| ||||||||| |||  | |||| ||||||||||||| ||| ||  |||||||||||    
T  15762307 ctttcctgggaaaaatgtattcctaggcatatttgtgtggtacccacctaccaaacaaaggaatattcgattccagcctt 15762386  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 157 - 237
Target Start/End: Complemental strand, 10637437 - 10637357
Alignment:
Q  157 gctttcctgggaaaaatgtattcctgggcatatttttgtttttcccatctaccaaacaaagcaatctttaattccagcctt 237  Q
    ||||||||||||||| || |||||||| ||||||| |||  ||||||  |||||||||||| ||| |||||||||| ||||    
T  10637437 gctttcctgggaaaattgcattcctggacatatttgtgtggttcccacttaccaaacaaaggaatgtttaattccaacctt 10637357  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 237
Target Start/End: Original strand, 32718157 - 32718237
Alignment:
Q  157 gctttcctgggaaaaatgtattcctgggcatatttttgtttttcccatctaccaaacaaagcaatctttaattccagcctt 237  Q
    ||||||||||||||| || |||||| | ||||||| |||  ||||||  |||||||||||| ||| |||||||||| ||||    
T  32718157 gctttcctgggaaaattgcattcctagacatatttgtgtggttcccacttaccaaacaaaggaatgtttaattccaacctt 32718237  T

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Target: scaffold0500 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0500
Description:

Target: scaffold0500; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 237
Target Start/End: Original strand, 358 - 394
Alignment:
Q  201 ccatctaccaaacaaagcaatctttaattccagcctt 237  Q
    ||||||||||||||||||||| || ||||||||||||    
T  358 ccatctaccaaacaaagcaatattcaattccagcctt 394  T

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