View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1480_high_31 (Length: 249)
Name: NF1480_high_31
Description: NF1480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1480_high_31 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 9 - 249
Target Start/End: Complemental strand, 15142770 - 15142530
Alignment:
| Q |
9 |
agcaaaggtagcagacaagcatattttgttactacatgtgaaatagtcgtctataagattttttataatgttggaacatgtgaagagctttatagtaata |
108 |
Q |
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| T |
15142770 |
agcataggtagcagacaagcatattttgttactacatgtgaaatagtcgtctataagattttttataatgttggaacatgtgaaaagctttatagtaata |
15142671 |
T |
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| Q |
109 |
atttaactcaagtgtagaaacaaatcagtttgttaaggagataagaaattccatcacttcaagaaacactgaattttatagatagacatcacggataacc |
208 |
Q |
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| T |
15142670 |
atttaactcaagtgtagaaacaaatcagtttgttaaggagataagaaattccatcacttcaagaaacactgaattttatagatagacatcacggataacc |
15142571 |
T |
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| Q |
209 |
aattagggaatcatttacttgcattaccaaataactgaggc |
249 |
Q |
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|||||||| |||||||||||||||||||||||||||||||| |
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| T |
15142570 |
aattagggtatcatttacttgcattaccaaataactgaggc |
15142530 |
T |
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