View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1480_high_32 (Length: 241)
Name: NF1480_high_32
Description: NF1480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1480_high_32 |
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Alignment Details
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 10 - 224
Target Start/End: Complemental strand, 5805933 - 5805718
Alignment:
| Q |
10 |
attatactgaaaacaaaacagagtataatgtttcaattttgatg-gctatttacttaactcaaaactccactccacattcgacagtgactggttccaatt |
108 |
Q |
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| T |
5805933 |
attatactgaaaacaaaacagagtataatgtttcaatcttgatgtgctatttacttaactcaaaactccactccacattcgacagtgactggttccaatt |
5805834 |
T |
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| Q |
109 |
ttcaaaccattctttttacaacatctgaaaacacaacacacaagcgtaaccgcaaagccaatcattatccaccatcatgtctcaccaacaacctctgtta |
208 |
Q |
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| T |
5805833 |
ttcaaaccattctttttacaacctctgaaaacacaacacacaagcgtaaccgcaaagccaatcattatccaccagcatgtctcaccaacaacctctgtta |
5805734 |
T |
|
| Q |
209 |
gaacaagaacaagaag |
224 |
Q |
| |
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|||||| || |||||| |
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| T |
5805733 |
gaacaacaagaagaag |
5805718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 77; Significance: 7e-36; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 38 - 224
Target Start/End: Complemental strand, 9562807 - 9562616
Alignment:
| Q |
38 |
tgtttcaattttgatg-gctatttacttaactcaaaactccactccacattcgacagtgactggttccaattttcaaaccattctttttacaacatctga |
136 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||| | |||||||||||| ||||||||||||||||| || ||||||||| | | | |
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| T |
9562807 |
tgtttcaattttgatgtgctatttacttaactcaaaactccacac-----tcgacagtgacttgttccaattttcaaacctctcgttttacaacctttta |
9562713 |
T |
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| Q |
137 |
aaacacaacacacaagcgtaaccgcaaagccaatcattatccaccatcatgtctcac---------caacaacctctgttagaacaagaacaagaag |
224 |
Q |
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| T |
9562712 |
aaacacaacacaccagtgtaactgcaacaccaatcattatccaccaccatgtctcaccaccaacaacaacaacctctgttagaacaacaacaagaag |
9562616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 38 - 200
Target Start/End: Complemental strand, 21017237 - 21017078
Alignment:
| Q |
38 |
tgtttcaattttgatg-gctatttacttaa-ctcaaaactccactccacattcgacagtgactggttccaattttcaaaccattctttttacaacatctg |
135 |
Q |
| |
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|||||||||||||||| |||||| |||||| ||||||||||||| | || | || |||| ||||||||||||||||| |||||||||||| ||| |
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| T |
21017237 |
tgtttcaattttgatgtgctattcacttaaactcaaaactccacac-----tcaatagcgactagttccaattttcaaacctctctttttacaacctctt |
21017143 |
T |
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| Q |
136 |
aaaacacaacacacaagcgtaaccgcaaagccaatcattatccaccatcatgtctcaccaacaac |
200 |
Q |
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|||| |||||||||||||||||| |||| |||||||||||||||||| ||||||||||||||||| |
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| T |
21017142 |
aaaatacaacacacaagcgtaactgcaatgccaatcattatccaccaccatgtctcaccaacaac |
21017078 |
T |
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