View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1480_low_1 (Length: 610)
Name: NF1480_low_1
Description: NF1480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1480_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 532; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 532; E-Value: 0
Query Start/End: Original strand, 10 - 592
Target Start/End: Original strand, 45816339 - 45816921
Alignment:
| Q |
10 |
attattctgatttgtgctcaatttatatgggatgtttaaagcatagtgtaggctgctttaatgggttgaattatccttattattctccatttaaataatc |
109 |
Q |
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| T |
45816339 |
attattctgatttgtgctcaatttatatgggatgtttaaagcatagtgtaggctgctttaatgggttgaattatccttattattctccatttaaataatc |
45816438 |
T |
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| Q |
110 |
cttcttgcttgattcnnnnnnnnnnnnnnnnntatatacttcttacttaacatcttcaaaaaatatttcatggttacctcctataatgggtttatcccca |
209 |
Q |
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| T |
45816439 |
cttcttgcttgattcaaaataaaaataaaaaatatatacttcttacttaacatcttcaaaaaatatttcatggttacctcctataatgggtttatcccca |
45816538 |
T |
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| Q |
210 |
acattattctcctttcctgtctttccctttctaatctcagactcttcccacaatgtgaaaccgcttgaagtatgtgaactgcaattggagttgtcgtcat |
309 |
Q |
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| T |
45816539 |
acattattctcctttcctgtctttccctttctaatctcagactcttcccacaatgtgaaaccgcttgaagtatgtgaactgcaattggagttgtcgtcat |
45816638 |
T |
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| Q |
310 |
ttctatcagcactagttgcttgatgcacagtgaaaagtgatgatgcttctggctttggaaccctttgattattattcacgcaggaattaatgtggctgat |
409 |
Q |
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| T |
45816639 |
ttctatcagcactagttgcttgatgcacagtgaaaagtgatgatgcttctggctttggaaccctttgattattattcacgcaggaattaatgtggctgat |
45816738 |
T |
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| Q |
410 |
actgtaagtcccaattcctccaggtaagaggtgctcaactgaagctggtgttgctaaagggggttgcttctcaaccaccgatgagatttcatctgtggct |
509 |
Q |
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| T |
45816739 |
actgtaagtcccaattcctccaggtaagaggtgctcaactgaagctggtgttgctaaagggggttgcttctcaaccaccgatgagatttcatctgtggct |
45816838 |
T |
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| Q |
510 |
tcttccttggcactggattttgcttctacctcctctagtggccgcaagaaatcatgggtcttgaggaaacttgctgttcatgc |
592 |
Q |
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| T |
45816839 |
tcttccttggcactggattttgcttctacctcctctagtggccgcaagaaatcatgggtcttgaggaaacttgctgttcatgc |
45816921 |
T |
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