View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1480_low_11 (Length: 387)
Name: NF1480_low_11
Description: NF1480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1480_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 16 - 375
Target Start/End: Original strand, 51431110 - 51431487
Alignment:
| Q |
16 |
aaatgatttctccatttttctatatatttctcacccctcaaagatcttccttcccatccaa----------tggacgttagaaaatcttgtccttagtac |
105 |
Q |
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| T |
51431110 |
aaatgatttctccatttttctgtatatttctcacccctcaaaggtctcccttcccatccaaactcccaaaatggacgttagaaaatctcgtccttagtac |
51431209 |
T |
|
| Q |
106 |
aaaggaaacaaatggcatcatgnnnnnnncgtaattgataatcaattgtacagacacattaataacaatttaaaaggcatgtgttctgacttctaagcat |
205 |
Q |
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| T |
51431210 |
aaaggaaacaaatggcatcatgaaaaatacataattgataatcaattgtacagacacattaataacaatttaaaaggcatgtgttctgacttctaagcat |
51431309 |
T |
|
| Q |
206 |
aacagtggatatttgctagacattgacagttacacattaaggttcaataattattaattaggcatataacatggtgtggag-----aacataacatagta |
300 |
Q |
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| T |
51431310 |
aacagtggatatttggtagacattgacagttacacattaaggttcaataattattaattaggcatataacatggtgtggagaacataacataacatagta |
51431409 |
T |
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| Q |
301 |
ataaatactaagtttct---tgcttgtacatgatgaatgcacatgctattgaagacataccacttcaaccaacagtat |
375 |
Q |
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| T |
51431410 |
ataaatactaagtttcttgctgcttgtacatgatgaatgcacatgctattggagacataccacttcaaccaacagtat |
51431487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 52
Target Start/End: Original strand, 22114891 - 22114923
Alignment:
| Q |
20 |
gatttctccatttttctatatatttctcacccc |
52 |
Q |
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| T |
22114891 |
gatttctccatttttctatgtatttctcacccc |
22114923 |
T |
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