View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1480_low_13 (Length: 383)
Name: NF1480_low_13
Description: NF1480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1480_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 6 - 370
Target Start/End: Complemental strand, 32060891 - 32060527
Alignment:
| Q |
6 |
tattcattgactagctcctgcttactgattcttaattgatcactcttgtgtggttaggcttgccgatgagaattcactatactgtgataaattccaccgt |
105 |
Q |
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| T |
32060891 |
tattcattgactatcccctgcttacggattcttaatttatcactcttgtgtgtttaggcttgcctatgagaattcacttttctgtgataaattccaccgt |
32060792 |
T |
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| Q |
106 |
caggaaactggatggaggaaatgcagcaattgcagcaaggtaaattttatgtttgattttttgtactatttaaatactcattaagccttgtctttctctc |
205 |
Q |
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| T |
32060791 |
catgaaactggatggaggaaatgcagcaattgcagcaaggtaaattttatgtttgattttttgtactatttaaatactcattaagccttgtctttctctc |
32060692 |
T |
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| Q |
206 |
ctttgatattgaaatatattatttgaannnnnnnnnnnngcagcctatccacagtggatgtatagtatcaaagtcttcgttcgagtaccttgatttcggt |
305 |
Q |
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| T |
32060691 |
ctttgatattgaaatatattatttgaatttttcttttttgcagcctatccacagtggatgtatagtatcaaagtcttcgttcgagtaccttgatttcggt |
32060592 |
T |
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| Q |
306 |
ggtataacttgtgttacctgtgttaagccctcccagctttgtctggtaaggttaagttgaatatt |
370 |
Q |
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| T |
32060591 |
ggtataacttgtgttacctgtgttaagccctcccagctttgtctggtaaggttaagttgaatatt |
32060527 |
T |
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Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 245 - 328
Target Start/End: Complemental strand, 27796417 - 27796334
Alignment:
| Q |
245 |
gcagcctatccacagtggatgtatagtatcaaagtcttcgttcgagtaccttgatttcggtggtataacttgtgttacctgtgt |
328 |
Q |
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| T |
27796417 |
gcagcctatccacagtggatgcgtagtatctaaatctctgttcgagtatcttgacttcggtggtataggttgtgttagctgtgt |
27796334 |
T |
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