View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1480_low_15 (Length: 371)
Name: NF1480_low_15
Description: NF1480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1480_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 41 - 313
Target Start/End: Original strand, 51761895 - 51762167
Alignment:
| Q |
41 |
aaggccaaatggaagaaacacacataaccatgaaaatctcactaagatcttctggtttctaccattgcgcaaaagtaaacgaatgcacaaatattcacaa |
140 |
Q |
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| T |
51761895 |
aaggccaaatggaagaaacacacataaccatgaaaatctcactaagatcttctggtttctaccattgcgcaaaagtaaacgaatgcacaaatattcacaa |
51761994 |
T |
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| Q |
141 |
tgttctgtaatcattagcatataacttcctaattaggagaaaaaatctaaccattttagcaacatctttgatagaattctccaaactaggatgaaaacaa |
240 |
Q |
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| T |
51761995 |
tgttctgtaatcattagcatataacttcctaattaggagaaaaaatctaaccattttagcaacatctttgatagaattctccaaactaggatgaaaacaa |
51762094 |
T |
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| Q |
241 |
ttctgaactagttcataattgttgttaattaaattagaactatgcccaccaaacccatctaatccattccatt |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
51762095 |
ttctgaactagttcataattgttgttaattaaattagaactatgcccaccaaatccatctaatccattccatt |
51762167 |
T |
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