View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1480_low_17 (Length: 335)
Name: NF1480_low_17
Description: NF1480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1480_low_17 |
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| [»] scaffold0586 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 193; Significance: 1e-105; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 2 - 236
Target Start/End: Complemental strand, 10642976 - 10642749
Alignment:
| Q |
2 |
acagacccaaacagagaaggatacatggttcttattgaaatatttttgatatttaacaagtatacgtacaaacccaataggcttataatacaaaaatagt |
101 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
10642976 |
acagacccaaacagagaaggatacacggttcttattgaaatatttctgatatttaacaagtatacgtacaaacccaataggcttataatacaaaaatcgt |
10642877 |
T |
|
| Q |
102 |
acataaaagcaatcacacaactaagaaggatacacacaagcacatagcacaagacacatgtggcccataccagaaatcatgttatcctcactaagcctac |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
10642876 |
acataaaagcaatcacacaactaagaaggatacacacaag-------cacaagacacacgtggcccataccagaaatcatgttatcctcactaagcctac |
10642784 |
T |
|
| Q |
202 |
cttacatctcatttaaaaggatcaaactaacttag |
236 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
10642783 |
cttacatctcatttaaaaggatcaaactaacttag |
10642749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 2 - 236
Target Start/End: Original strand, 32712862 - 32713089
Alignment:
| Q |
2 |
acagacccaaacagagaaggatacatggttcttattgaaatatttttgatatttaacaagtatacgtacaaacccaataggcttataatacaaaaatagt |
101 |
Q |
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||||||||||||||||||||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32712862 |
acagacccaaacagagaaggagacacagttcttattgaaatatttctgatatttaacaagtatacgtacaaacccaataggcttataatacaaaaatagt |
32712961 |
T |
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| Q |
102 |
acataaaagcaatcacacaactaagaaggatacacacaagcacatagcacaagacacatgtggcccataccagaaatcatgttatcctcactaagcctac |
201 |
Q |
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| T |
32712962 |
acataaaagcaatcacacaactaagaaggatacacaca-------agcacaagacacacgtagcccataccagaaatcatgttatcctcactaagcctac |
32713054 |
T |
|
| Q |
202 |
cttacatctcatttaaaaggatcaaactaacttag |
236 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
32713055 |
cttacatctcatttaaaaggatcaaactaacttag |
32713089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 278 - 314
Target Start/End: Complemental strand, 10642707 - 10642671
Alignment:
| Q |
278 |
ccataaactaaacgaatcaaagacttaaacctcaaga |
314 |
Q |
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| T |
10642707 |
ccataaactaaacgaatcaaagacttaaacctcaaga |
10642671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 278 - 314
Target Start/End: Original strand, 32713131 - 32713167
Alignment:
| Q |
278 |
ccataaactaaacgaatcaaagacttaaacctcaaga |
314 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
32713131 |
ccataaactaaacgaatcaaagacttaaacctcaaga |
32713167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 2 - 236
Target Start/End: Original strand, 23923673 - 23923900
Alignment:
| Q |
2 |
acagacccaaacagagaaggatacatggttcttattgaaatatttttgatatttaacaagtatacgtacaaacccaataggcttataatacaaaaatagt |
101 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
23923673 |
acagacccaaacagagaaggatacatggttcttattgaaatatttctgatatttaacaagtatacgtacaaacccaatagacttataatacaaaaatagt |
23923772 |
T |
|
| Q |
102 |
acataaaagcaatcacacaactaagaaggatacacacaagcacatagcacaagacacatgtggcccataccagaaatcatgttatcctcactaagcctac |
201 |
Q |
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|||||||||||| ||||||||||||||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
23923773 |
acataaaagcaaccacacaactaagaaggatacacaca-------aacacaagacacacgtggcccataccagaaatcatgttatcctcactaagcctac |
23923865 |
T |
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| Q |
202 |
cttacatctcatttaaaaggatcaaactaacttag |
236 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
23923866 |
cttacatctcatttaaaaggatcaaactaacttag |
23923900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 278 - 314
Target Start/End: Original strand, 23923942 - 23923978
Alignment:
| Q |
278 |
ccataaactaaacgaatcaaagacttaaacctcaaga |
314 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
23923942 |
ccataaactaaacgaatcaaagacttaaacctcaaga |
23923978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0586 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: scaffold0586
Description:
Target: scaffold0586; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 2 - 90
Target Start/End: Complemental strand, 3550 - 3462
Alignment:
| Q |
2 |
acagacccaaacagagaaggatacatggttcttattgaaatatttttgatatttaacaagtatacgtacaaacccaataggcttataat |
90 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |
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| T |
3550 |
acagacccaaacagagaaggatacacggttcttattgaaatatttctgatatttaacaagtatacgtacaaacccaataggcttctaat |
3462 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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