View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1480_low_2 (Length: 582)
Name: NF1480_low_2
Description: NF1480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1480_low_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 284 - 571
Target Start/End: Complemental strand, 13471380 - 13471098
Alignment:
| Q |
284 |
actaaattttgtcctttctatagtttctctctt-gtagatagctacataccataatatgcctgaatcagaaatctgtcaactgatgatactggtgatgaa |
382 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13471380 |
actaaattttgtcctttctatagtttctctctttgtagatagctacataccataatatgcctgaatcagaaatctgtcaactgatgatactggtgatgaa |
13471281 |
T |
|
| Q |
383 |
gccgtttttgatacataatttcatataaataataatcttccaaaggatatggtggtgaaaatcgataagcatgcatgcatgctaccctctctgctctgtc |
482 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
13471280 |
gccgtttttgatacataatttcatataaataataatcttccaaaggatatggtggtgaaaatcgataagcatgcatgcatgctaccatctctgctctgtc |
13471181 |
T |
|
| Q |
483 |
tctatctctattatggaatagttcctacaatcctaactctttcatttaacctctcttaacttgatactttctctgccccatgctcctat |
571 |
Q |
| |
|
| ||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13471180 |
t------ctattatggaatagttcctccaatcctaactctctcatttaacctctcttaacttgatactttctctgccccatgctcctat |
13471098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 78 - 258
Target Start/End: Complemental strand, 13471588 - 13471407
Alignment:
| Q |
78 |
tttttactattgatggattcgtccttcatttatttgatcaatgtaaataaatgttaacgacaaaatgcagaagcaaagtttacttatcctacgtcaagta |
177 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
13471588 |
tttttactattgatggattcgtccttcatttatttgatcaatgtaaagaaatgttaacgacaaaatgcagaagcaaactttacttatcctacgtcaagta |
13471489 |
T |
|
| Q |
178 |
ttaaggttcgtcaaatgaacaatcactttcacttctgatatg-aacatagggttgactacttgactcaatccaaatgtcatg |
258 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13471488 |
ttaaggttcgtcaaatgaacaatcactttcacttctgatatgaaacatagggttgactacttgactcaatccaaatgtcatg |
13471407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University