View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1480_low_21 (Length: 286)
Name: NF1480_low_21
Description: NF1480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1480_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 243; Significance: 1e-135; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 18 - 284
Target Start/End: Original strand, 7619874 - 7620140
Alignment:
| Q |
18 |
tagggtgcaccgataatggcacagctcgttgaagtgtcaacccataaccttcatccatgttcattttttcagcattgagtccattttcaagttcccaatc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
7619874 |
tagggtgcaccgataatggcacagctcgttgaagtgtcaacccataaccttcatccatgttcatttttccagcattgagtccattttcaagttcccaatc |
7619973 |
T |
|
| Q |
118 |
aaatgaatgggccagtgtagctgttagaagttggaccatacgaagccctagactcatcccaggacatattctacgtccagcaccaaaaggtataacttca |
217 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7619974 |
aaatgaatgggctagtgtagctgttagaagttggaccatacgaagccctagactcatcccaggacatattctacgtccagcaccaaaaggtataacttca |
7620073 |
T |
|
| Q |
218 |
aaatcatttcccttaacatcaacatcacaattctcaccacctgataagaacctctcgggtttgaact |
284 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||| ||||||||| || |||||||||| |
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| T |
7620074 |
aaatcatttcccttaacatcaacatcacacttctcaccacctggtaagaacctttcaggtttgaact |
7620140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 18 - 284
Target Start/End: Complemental strand, 7664018 - 7663752
Alignment:
| Q |
18 |
tagggtgcaccgataatggcacagctcgttgaagtgtcaacccataaccttcatccatgttcattttttcagcattgagtccattttcaagttcccaatc |
117 |
Q |
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||||||| ||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
7664018 |
tagggtgtaccaataatggcacagctcgttgcagtgtcaacccataaccttcatccatgttcatttttccagcattgagtccattttcaagttcccaatc |
7663919 |
T |
|
| Q |
118 |
aaatgaatgggccagtgtagctgttagaagttggaccatacgaagccctagactcatcccaggacatattctacgtccagcaccaaaaggtataacttca |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7663918 |
aaatgaatgggccagtgtagctgttagaagttggaccatacgaagccctagactcatcccaggacatattctacgtccagcaccaaaaggtataacttca |
7663819 |
T |
|
| Q |
218 |
aaatcatttcccttaacatcaacatcacaattctcaccacctgataagaacctctcgggtttgaact |
284 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||| ||||||||| || |||||||||| |
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|
| T |
7663818 |
aaatcatttcccttaacatcaacatcacacttctcaccacctggtaagaacctttcaggtttgaact |
7663752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 18 - 282
Target Start/End: Complemental strand, 7669715 - 7669451
Alignment:
| Q |
18 |
tagggtgcaccgataatggcacagctcgttgaagtgtcaacccataaccttcatccatgttcattttttcagcattgagtccattttcaagttcccaatc |
117 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |||||||||||||||| |||||||||||||||||||| |
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| T |
7669715 |
tagggtgcaccgataatggcacaatccgttgaagtgtcaacccataaccttcatccttgttctttttttcagcattgagcccattttcaagttcccaatc |
7669616 |
T |
|
| Q |
118 |
aaatgaatgggccagtgtagctgttagaagttggaccatacgaagccctagactcatcccaggacatattctacgtccagcaccaaaaggtataacttca |
217 |
Q |
| |
|
|||||||||||| ||||||||||||||||| || |||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
7669615 |
aaatgaatgggctagtgtagctgttagaagctgtaccatacgaagcccaagactcatcccaacacatattctacgtccagcaccaaaaggtataacttca |
7669516 |
T |
|
| Q |
218 |
aaatcatttcccttaacatcaacatcacaattctcaccacctgataagaacctctcgggtttgaa |
282 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||| |||||||||| || |||||||| |
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|
| T |
7669515 |
aaatcatttcccttaacatcaacatcacacttctcaccacctaataagaacctttcaggtttgaa |
7669451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 98 - 286
Target Start/End: Complemental strand, 7683177 - 7682989
Alignment:
| Q |
98 |
ccattttcaagttcccaatcaaatgaatgggccagtgtagctgttagaagttggaccatacgaagccctagactcatcccaggacatattctacgtccag |
197 |
Q |
| |
|
||||||||||| ||||||| ||| ||||| |||| ||||| || ||||||||||||| |||| |||||| ||| |||| ||||||||||||||||| |
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| T |
7683177 |
ccattttcaagctcccaattaaacgaatgagccaaggtagcaatttgaagttggaccattcgaattcctagattcaatccagcacatattctacgtccag |
7683078 |
T |
|
| Q |
198 |
caccaaaaggtataacttcaaaatcatttcccttaacatcaacatcacaattctcaccacctgataagaacctctcgggtttgaacttt |
286 |
Q |
| |
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| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
7683077 |
cgccaaaaggtataacctcaaaatcatttcccttcacatcaacatcacaattctcaccacctggtaagaacctctcgggtttgaacttt |
7682989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 89 - 283
Target Start/End: Complemental strand, 7683783 - 7683589
Alignment:
| Q |
89 |
gcattgagtccattttcaagttcccaatcaaatgaatgggccagtgtagctgttagaagttggaccatacgaagccctagactcatcccaggacatattc |
188 |
Q |
| |
|
||||| || ||||||||||| ||||||| ||| ||||| |||| || || || ||||||||||||| |||| | |||| ||| || | ||||||| |
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| T |
7683783 |
gcatttagcccattttcaagctcccaattaaacgaatgagccaaagtggcaatttgaagttggaccattcgaattcatagattcaatcccgcgcatattc |
7683684 |
T |
|
| Q |
189 |
tacgtccagcaccaaaaggtataacttcaaaatcatttcccttaacatcaacatcacaattctcaccacctgataagaacctctcgggtttgaac |
283 |
Q |
| |
|
||| |||| |||||||| ||||||| ||||||||||||||||| |||||||||| ||| |||||||||||| ||||||||| || ||||||||| |
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| T |
7683683 |
tacatccaacaccaaaaagtataacctcaaaatcatttcccttcacatcaacattacagttctcaccacctagtaagaacctttcaggtttgaac |
7683589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 110 - 258
Target Start/End: Complemental strand, 45481424 - 45481276
Alignment:
| Q |
110 |
tcccaatcaaatgaatgggccagtgtagctgttagaagttggaccatacgaagccctagactcatcccaggacatattctacgtccagcaccaaaaggta |
209 |
Q |
| |
|
||||||||| ||| ||| |||| || ||||| |||||||| ||||| | ||| || |||||||| |||| ||||||||||||||||||||||||||||| |
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| T |
45481424 |
tcccaatcatatgcatgagccaacgttgctgtaagaagttgaaccatcctaagaccaagactcataccagcacatattctacgtccagcaccaaaaggta |
45481325 |
T |
|
| Q |
210 |
taacttcaaaatcatttcccttaacatcaacatcacaattctcaccacc |
258 |
Q |
| |
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| || ||||| ||||||||| |||||||||||||| | ||||||||||| |
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| T |
45481324 |
tcacctcaaagtcatttcccctaacatcaacatcaaacttctcaccacc |
45481276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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