View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1480_low_22 (Length: 280)
Name: NF1480_low_22
Description: NF1480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1480_low_22 |
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Alignment Details
Target: chr6 (Bit Score: 171; Significance: 7e-92; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 72 - 265
Target Start/End: Complemental strand, 33652528 - 33652332
Alignment:
| Q |
72 |
tattcaatgatatgggaccaattgcatcgccttcgtatgctaattggttatttctaataaattctacaaaaatgtttgatttcgttttaatatcattcat |
171 |
Q |
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| T |
33652528 |
tattcaatgatatgggaccaattgcatcgccttcgtatgctaattggttatctctagtaaattctacaaaaatgtttgatttcgttttaatatcattcat |
33652429 |
T |
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| Q |
172 |
ggttttaa---atggatagttttgcagaaaattctggttggtactattttagtattccatgtatattttcatgttttatgatttcctatgaggtatt |
265 |
Q |
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| T |
33652428 |
ggttttaactgatggatagttttgcagaaaattctggttggtactattttagtattccatgtttattttcatgttttatgatttcctatgaggtatt |
33652332 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 87 - 247
Target Start/End: Complemental strand, 4365576 - 4365411
Alignment:
| Q |
87 |
gaccaattgcatcgccttcgtatgctaattggttatttctaataaattctacaaaaatgtttgatttcgtttta-atatcattcatggttttaa---atg |
182 |
Q |
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| T |
4365576 |
gaccaactgcatctccttcgtatgttaattggttatctccaataaattctacagaaatgtttgatttcattttacatatcattcatggttttaattgaag |
4365477 |
T |
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| Q |
183 |
gatagttttgcagaaa-attctggttggtactattttagtattccatgtatattttcatgttttat |
247 |
Q |
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| T |
4365476 |
gatagttttgcagaaattttttgtttggtactgttatagtattctatatatagttttatgttttat |
4365411 |
T |
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