View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1480_low_23 (Length: 279)
Name: NF1480_low_23
Description: NF1480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1480_low_23 |
 | |
|
| [»] scaffold0045 (4 HSPs) |
| | |
|
Alignment Details
Target: scaffold0045 (Bit Score: 188; Significance: 1e-102; HSPs: 4)
Name: scaffold0045
Description:
Target: scaffold0045; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 32 - 259
Target Start/End: Complemental strand, 52615 - 52388
Alignment:
| Q |
32 |
cattgactagcttaaaaaatattgaaaccctaattaagagccatcgtatatacgtacgttccatctttcaggatcaaaacacatgggatccttaaaattt |
131 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
52615 |
cattgactagcttaaaaaatatcgaaaccctaattaagagttatcgtatatacgtacgttccatctttcaggatcaaaacatatgggatccttaaaattt |
52516 |
T |
|
| Q |
132 |
tctgggtttgtatgaagataacgaaggaggagaattacattccatccctttggtattgtataacctataaaaaatagttttcatgatcacaaaattagtt |
231 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| ||||||||||||||| |
|
|
| T |
52515 |
tctgggtttgtatgaagataacgaaggaggagaattacattccatccctttggtatcatataacctacaaaaaatagttttcatcatcacaaaattagtt |
52416 |
T |
|
| Q |
232 |
gtaaattccataggtactaggaacacat |
259 |
Q |
| |
|
||||| ||||||| |||||||||||||| |
|
|
| T |
52415 |
gtaaactccatagttactaggaacacat |
52388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 81 - 244
Target Start/End: Complemental strand, 34990 - 34819
Alignment:
| Q |
81 |
atacgtacgttccatctttcaggatcaaaacacatgggatccttaaaattttctgggtttgtatgaagataacgaaggaggagaattacattccatccct |
180 |
Q |
| |
|
||||||||||||||||| ||||| | ||| ||||||||||||||||||| ||||||| |||||||||||||||||| | || ||||||||||||||||| |
|
|
| T |
34990 |
atacgtacgttccatctatcagggttgaaatacatgggatccttaaaattctctgggtctgtatgaagataacgaagcaagacaattacattccatccct |
34891 |
T |
|
| Q |
181 |
ttggtattgtataaccta-taaaaaata-------gttttcatgatcacaaaattagttgtaaattccatag |
244 |
Q |
| |
|
||||||| ||||||||| |||||||| |||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
34890 |
ttggtatcttataacctacaaaaaaataatattgtgttttcatgatcacgaaattagttgtaaactccatag |
34819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 81 - 207
Target Start/End: Complemental strand, 27442 - 27316
Alignment:
| Q |
81 |
atacgtacgttccatctttcaggatcaaaacacatgggatccttaaaattttctgggtttgtatgaagataacgaaggaggagaattacattccatccct |
180 |
Q |
| |
|
|||||||| |||||||| ||||||| ||| |||||||||||||||||| | || | ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27442 |
atacgtacattccatctatcaggattgaaattcatgggatccttaaaattctttgaatctgtatgaagataacgaaggaggagaattacattccatccct |
27343 |
T |
|
| Q |
181 |
ttggtattgtataacctataaaaaata |
207 |
Q |
| |
|
||||||| ||||||||| |||||||| |
|
|
| T |
27342 |
ttggtatcttataacctacaaaaaata |
27316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 90 - 207
Target Start/End: Complemental strand, 42791 - 42674
Alignment:
| Q |
90 |
ttccatctttcaggatcaaaacacatgggatccttaaaattttctgggtttgtatgaagataacgaaggaggagaattacattccatccctttggtattg |
189 |
Q |
| |
|
|||||||| ||||| || ||| ||||||||| || || || ||||| | |||||||| ||||||||| | || || || | |||||||||||||||| |
|
|
| T |
42791 |
ttccatctatcagggtcgaaatgcatgggatcattgaagttctctggatctgtatgaacataacgaagaaagacaagtatactccatccctttggtatct |
42692 |
T |
|
| Q |
190 |
tataacctataaaaaata |
207 |
Q |
| |
|
||||||||| |||||||| |
|
|
| T |
42691 |
tataacctacaaaaaata |
42674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University