View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1480_low_24 (Length: 278)
Name: NF1480_low_24
Description: NF1480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1480_low_24 |
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Alignment Details
Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 7 - 268
Target Start/End: Complemental strand, 12452613 - 12452351
Alignment:
| Q |
7 |
gctggttctgccataatgaataatcgctatgtacttactggggcctcttgggtaacgggtgcttttaacagggtttctaaggcagctgtggaagtaggtc |
106 |
Q |
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| T |
12452613 |
gctggttctgccataatgaagaatcgctatgtacttactggggcctcttgggtaacgggtgcttttaacagggtgtctaaggcagctgtggaagtaggtc |
12452514 |
T |
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| Q |
107 |
agaaaacaaaagagaaagtggagaatgcagaacagcaagagaagcgacaggttgaagatcagtatgcacaggtcctttccgagccatcaaaagcagctgc |
206 |
Q |
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| T |
12452513 |
agaaaacaaaagagaaagtggagaatgcagaacagcaagagaagcgacaggttgaagatcagtatgcacaggtcctttccgaaccctcaaaagcagcagc |
12452414 |
T |
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| Q |
207 |
agcagcaagtgagcagcagtcttccaagcctggtcctgctcctgctcaggg-ttgatcctttg |
268 |
Q |
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| T |
12452413 |
agcagcaagtgagcagcagtcttccaagcctggtcctgctcctgctcagggtttgatcctttg |
12452351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 7 - 259
Target Start/End: Complemental strand, 12450339 - 12450090
Alignment:
| Q |
7 |
gctggttctgccataatgaataatcgctatgtacttactggggcctcttgggtaacgggtgcttttaacagggtttctaaggcagctgtggaagtaggtc |
106 |
Q |
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| T |
12450339 |
gctggttctgccataatgaagaatcgctatgtacttactggggcctcttgggtaacgggtgcttttaacagggtttctaaggcagctgtggaagtaagcc |
12450240 |
T |
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| Q |
107 |
agaaaacaaaagagaaagtggagaatgcagaacagcaagagaagcgacaggttgaagatcagtatgcacaggtcctttccgagccatcaaaagcagctgc |
206 |
Q |
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| T |
12450239 |
aaaaaacaaaagagaaagtggagaatgcagaacagcaagagaagcgacaggttgaagatcagtatgcacaggtcctttccgagccctcaaaagca---gc |
12450143 |
T |
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| Q |
207 |
agcagcaagtgagcagcagtcttccaagcctggtcctgctcctgctcagggtt |
259 |
Q |
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| T |
12450142 |
agcagcaagtgagcagtagtcttccaagcttggtcctgctcctgctcagggtt |
12450090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 13 - 247
Target Start/End: Original strand, 27638772 - 27639003
Alignment:
| Q |
13 |
tctgccataatgaataatcgctatgtacttactggggcctcttgggtaacgggtgcttttaacagggtttctaaggcagctgtggaagtaggtcagaaaa |
112 |
Q |
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| T |
27638772 |
tctgctataatgaagaatcgctatatactcactggtactacctgggtaactggtgcttttaataaggttgctaaggcagctggggatgtaggacagaaaa |
27638871 |
T |
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| Q |
113 |
caaaagagaaagtggagaatgcagaacagcaagagaagcgacaggttgaagatcagtatgcacaggtcctttccgagccatcaaaagcagctgcagcagc |
212 |
Q |
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|||||||||||||||| ||||||||| | || |||| || | |||||||| |||||||| ||||||||||| ||| | |||||||| |||||| | |
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| T |
27638872 |
caaaagagaaagtggaaaatgcagaagtggaacagaatcgtaaagttgaagaccagtatgcgcaggtcctttcggagtccccaaaagca---gcagcaac |
27638968 |
T |
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| Q |
213 |
aagtgagcagcagtcttccaagcctggtcctgctc |
247 |
Q |
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| T |
27638969 |
aagtgaactgcactcttccaagcctgcacctgctc |
27639003 |
T |
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