View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1480_low_25 (Length: 268)
Name: NF1480_low_25
Description: NF1480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1480_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 17 - 250
Target Start/End: Complemental strand, 30951816 - 30951584
Alignment:
| Q |
17 |
atacttgatgaaagttgaaatccatttatataatttatggcttaccattttagaaacttttgtgtatagtatgtccttttttggggagagggttatgact |
116 |
Q |
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| T |
30951816 |
atacttgatgaaagttgaaattcatttatataatttatggcttaccattttagaaactttggtgtatagtatgtccttttttggg-agtgggttatgact |
30951718 |
T |
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| Q |
117 |
tgcgaggagaaaaaacaaaacattttggtagtcgatgtttgggcagagccttgatttaataagctaagaagtgatcactactgtgcatgcagagtctttt |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
30951717 |
tgcgaggagaaaaaacaaaacattttggtagtcgatgtttgggcagagccttgatttaataagctaagaagtgatcactactgtgcacgcagagtctttt |
30951618 |
T |
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| Q |
217 |
ttgtttgtttaattttaggcttttacctatctta |
250 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
30951617 |
ttgtttgtttaattttaggcttttacctatctta |
30951584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 17 - 250
Target Start/End: Complemental strand, 30967628 - 30967396
Alignment:
| Q |
17 |
atacttgatgaaagttgaaatccatttatataatttatggcttaccattttagaaacttttgtgtatagtatgtccttttttggggagagggttatgact |
116 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || ||||||||||| |
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| T |
30967628 |
atacttgatgaaagttgaaattcatttatataatttatggcttaccattttagaaactttggtgtatagtatgtccttttttggg-agtgggttatgact |
30967530 |
T |
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| Q |
117 |
tgcgaggagaaaaaacaaaacattttggtagtcgatgtttgggcagagccttgatttaataagctaagaagtgatcactactgtgcatgcagagtctttt |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
30967529 |
tgcgaggagaaaaaacaaaacattttggtagtcgatgtttgggcagagccttgatttaataagctaagaagtgatcactactgtgcacgcagagtctttt |
30967430 |
T |
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| Q |
217 |
ttgtttgtttaattttaggcttttacctatctta |
250 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
30967429 |
ttgtttgtttaattttaggcttttacctatctta |
30967396 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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