View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1480_low_27 (Length: 256)
Name: NF1480_low_27
Description: NF1480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1480_low_27 |
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Alignment Details
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 28799195 - 28798951
Alignment:
| Q |
1 |
acaggtgacactgaaaacttcataactcgaatagggtgtgcgtcgacttctttctcatttgtcaaggtagcattcttggtaatgaattgatccaaaccca |
100 |
Q |
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| T |
28799195 |
acaggtgacactgaaaacttcatagctcgaatagggtgtgcgtcgacttctttctcatttgttaaagtagcattcttggtaatgaattgatccaaaccca |
28799096 |
T |
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| Q |
101 |
ccatggcaactgtatttccacaagggacatcctccacggtttcttgcttctttcccatccaaataactgttctctgaacacttttcacatacaaatcttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28799095 |
ccatggcaactgtatttccacaagggacatcctccacggtttcttgcttctttcccatccaaataactgttctctgaacacttttcacatacaaatcttt |
28798996 |
T |
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| Q |
201 |
cttctccacagggatataatttggtcccataatcctgaccttcat |
245 |
Q |
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| T |
28798995 |
cttctccccagggatataatttggtcccataattctgaccttcat |
28798951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 28687816 - 28687573
Alignment:
| Q |
1 |
acaggtgacactgaaaacttcataactcgaatagggtgtgcgtcgacttctttctcatttgtcaaggtagcattcttggtaatgaattgatccaaaccca |
100 |
Q |
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| T |
28687816 |
acaggtgagacggaaaacttcatagcacgaatagggtgtgcatcaacttccttctcattcgtcaatgtagcattcttggtgataaattgatccaaaccaa |
28687717 |
T |
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| Q |
101 |
ccatggcaactgtatttccacaagggacatcctccacggtttcttgcttctttcccatccaaataactgttctctgaacacttttcacatacaaatcttt |
200 |
Q |
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| T |
28687716 |
ccatagcgactgtgttaccacaaggcacgtcctcaacagtttcttgtctctttcccatccaaataacagttctctgaacacttttcacatacaaatcttt |
28687617 |
T |
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| Q |
201 |
cttctccacagggatataatttggtcccataatcctgaccttca |
244 |
Q |
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| T |
28687616 |
cttctccccagggacaaaatttggtcccataattctgaccttca |
28687573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 28794093 - 28793850
Alignment:
| Q |
1 |
acaggtgacactgaaaacttcataactcgaatagggtgtgcgtcgacttctttctcatttgtcaaggtagcattcttggtaatgaattgatccaaaccca |
100 |
Q |
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|||||||| || ||||||||||| | |||||||||||||| || ||||| |||||||| ||||| |||||||||||||| || |||||||||||||| | |
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| T |
28794093 |
acaggtgagacggaaaacttcatcgcacgaatagggtgtgcatcaacttccttctcattcgtcaatgtagcattcttggtgataaattgatccaaaccaa |
28793994 |
T |
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| Q |
101 |
ccatggcaactgtatttccacaagggacatcctccacggtttcttgcttctttcccatccaaataactgttctctgaacacttttcacatacaaatcttt |
200 |
Q |
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| T |
28793993 |
ccatagcgactgtgttaccacaaggcacgtcctcaacagtttcttgtctctttcccatccaaataacagttcgctgaacacttttcacatacaaatcttt |
28793894 |
T |
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| Q |
201 |
cttctccacagggatataatttggtcccataatcctgaccttca |
244 |
Q |
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| T |
28793893 |
cttctccccagggacaaaatttggtcccataattctgaccttca |
28793850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 104; Significance: 6e-52; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 13 - 244
Target Start/End: Original strand, 18160332 - 18160563
Alignment:
| Q |
13 |
gaaaacttcataactcgaatagggtgtgcgtcgacttctttctcatttgtcaaggtagcattcttggtaatgaattgatccaaacccaccatggcaactg |
112 |
Q |
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|||||||||||| |||| |||||||| || || ||||| |||||||||||||| ||||||||||| ||||| |||||||||||||| |||| ||||| | |
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| T |
18160332 |
gaaaacttcatagctcggatagggtgggcatcaacttccttctcatttgtcaatgtagcattctttgtaataaattgatccaaaccaaccaaagcaacag |
18160431 |
T |
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| Q |
113 |
tatttccacaagggacatcctccacggtttcttgcttctttcccatccaaataactgttctctgaacacttttcacatacaaatctttcttctccacagg |
212 |
Q |
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| T |
18160432 |
tgttaccacaaggcacatcctcaacagtctcctgtctctttcccatccaaataacagttctctggacacttttcgtgtacagatctttcttctctccagg |
18160531 |
T |
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| Q |
213 |
gatataatttggtcccataatcctgaccttca |
244 |
Q |
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||| |||||||||||||||||||| ||||||| |
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| T |
18160532 |
gatgtaatttggtcccataatcctcaccttca |
18160563 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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