View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1480_low_29 (Length: 250)
Name: NF1480_low_29
Description: NF1480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1480_low_29 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 6 - 250
Target Start/End: Complemental strand, 7620447 - 7620203
Alignment:
| Q |
6 |
agcagcacagaatgggccattgcagaattaattcgaaacccaagaatcttagctcaagttcagcaagaattggacaatgttgtgggccgagataggaacg |
105 |
Q |
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| T |
7620447 |
agcaccacagaatgggccattgcagaattaattcgaaacccaagaatcttagctcaagttcaacaagaattggacaatgttgtgggtcgagataggaacg |
7620348 |
T |
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| Q |
106 |
tgaaagaagacgacatacctaacctaccttatctgcaagcagtgataaaagaaacattccgcttgcatccatcaacacctctttccctcccgcgaattgc |
205 |
Q |
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| T |
7620347 |
tgaaagaagacgacatacctaacctaccttacctacaagcagtgataaaagaaacattccgcttgcatccatcaacacctctttccctcccgcgaattgc |
7620248 |
T |
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| Q |
206 |
atctgaaagttgtgagatttttgggtaccacattccaaagggttc |
250 |
Q |
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| T |
7620247 |
atctgaaagttgtgagatttttgggtaccacattccaaagggttc |
7620203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 6 - 250
Target Start/End: Original strand, 7663445 - 7663689
Alignment:
| Q |
6 |
agcagcacagaatgggccattgcagaattaattcgaaacccaagaatcttagctcaagttcagcaagaattggacaatgttgtgggccgagataggaacg |
105 |
Q |
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| T |
7663445 |
agcaccacagaatgggccattgcagaattaattcgaaacccaagaattctagctaaagtccaagaagaattagacaaagttgtgggcagtgataggaacg |
7663544 |
T |
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| Q |
106 |
tgaaagaagacgacatacctaacctaccttatctgcaagcagtgataaaagaaacattccgcttgcatccatcaacacctctttccctcccgcgaattgc |
205 |
Q |
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| T |
7663545 |
tgaaagaagacgacatacctaacctaccttacctacaagcagtgataaaagaaactttccgcttgcatccatcaacacctctttccctcccacgaattgc |
7663644 |
T |
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| Q |
206 |
atctgaaagttgtgagatttttgggtaccacattccaaagggttc |
250 |
Q |
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| T |
7663645 |
atctgaaagttgtgagatttttgggtaccacattccaaagggttc |
7663689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 16 - 250
Target Start/End: Original strand, 7669154 - 7669386
Alignment:
| Q |
16 |
aatgggccattgcagaattaattcgaaacccaagaatcttagctcaagttcagcaagaattggacaatgttgtgggccgagataggaacgtgaaagaaga |
115 |
Q |
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| T |
7669154 |
aatgggccattgcaaaaatgatcaaaaacccaagaatcttagctcaagttcaacaagaattggacaatgttgtgggccgagataggaacgtgaaa--aga |
7669251 |
T |
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| Q |
116 |
cgacatacctaacctaccttatctgcaagcagtgataaaagaaacattccgcttgcatccatcaacacctctttccctcccgcgaattgcatctgaaagt |
215 |
Q |
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| T |
7669252 |
tgacatacctaacctaccttacctacaaacagtgataaaagaaacatttcgcttgcacccatcaacacctctttccctcccacgaattgcatctgaaagt |
7669351 |
T |
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| Q |
216 |
tgtgagatttttgggtaccacattccaaagggttc |
250 |
Q |
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| T |
7669352 |
tgtgagatttttgggtaccacgttccaaagagttc |
7669386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 14 - 246
Target Start/End: Original strand, 7682692 - 7682924
Alignment:
| Q |
14 |
agaatgggccattgcagaattaattcgaaacccaagaatcttagctcaagttcagcaagaattggacaatgttgtgggccgagataggaacgtgaaagaa |
113 |
Q |
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| T |
7682692 |
agaatgggctattgcagaattgctccgaaataaaagaatcatgacccaagtccaacaagaattagagaccgttgttggtcgagacaggaacgtgaaagaa |
7682791 |
T |
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| Q |
114 |
gacgacatacctaacctaccttatctgcaagcagtgataaaagaaacattccgcttgcatccatcaacacctctttccctcccgcgaattgcatctgaaa |
213 |
Q |
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| T |
7682792 |
gaggatttacctcaactaccttaccttcaagcagtggtaaaagaaacatttcgcttgcatccatctacacctctttccctcccgcgaattgcatctgaaa |
7682891 |
T |
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| Q |
214 |
gttgtgagatttttgggtaccacattccaaagg |
246 |
Q |
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| T |
7682892 |
gttgtgagatttttgggtaccacattccaaagg |
7682924 |
T |
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