View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1480_low_36 (Length: 227)
Name: NF1480_low_36
Description: NF1480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1480_low_36 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 5 - 227
Target Start/End: Original strand, 15142291 - 15142533
Alignment:
| Q |
5 |
aacttataatgcatacttttaagcaggcaaagatatttcctctatcacaaaataatttattatactatactata--------------gaaaataggtgt |
90 |
Q |
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| T |
15142291 |
aacttataatgcatacttttaagcaggcaaagatatttcctctatcacaaaataatttattatactatactatatatatgtatgtatagaaaataggtgt |
15142390 |
T |
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| Q |
91 |
gggagaaaagtatgtaattagatattattttggaatgttttgtggcttattataggttatagttaatggctaggg-------tagattcctcctgacccc |
183 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
15142391 |
gggagaaaagtatgtaattagatattattttggaatgttttgtggcttattataggttatagttaatggctagggttagatatagattcctcctgacccc |
15142490 |
T |
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| Q |
184 |
annnnnnnngtcttaaaagaataagacacataacccttatgcct |
227 |
Q |
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| T |
15142491 |
a-tatttttgtcttaaaagaataagacacataacccttatgcct |
15142533 |
T |
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