View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1480_low_4 (Length: 494)
Name: NF1480_low_4
Description: NF1480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1480_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 420; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 21 - 487
Target Start/End: Complemental strand, 3570966 - 3570499
Alignment:
| Q |
21 |
ggatgaacaaacagattaaaaccaaacacaactccggtaaacctaaaaggtcttcgacactattgagcctagagggaaacggctcactgaattaccgtgc |
120 |
Q |
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| T |
3570966 |
ggatgaacaaacagattaataccaaacacaattccggtaaacctaaaaggtcttcgacgctattgagcccagagggaaacggctcactgaattaccgagc |
3570867 |
T |
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| Q |
121 |
ggccaaacaatctgaagaatgcaccacaccattccactccacaacattattgcagttgcaggtgcccttcaaaaagtacaaatatattattaccagacaa |
220 |
Q |
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| T |
3570866 |
ggccaaacaatctgaagaatgcaccacaccactccactccacaacattattgcagttgcaggtgaccctcaaaaagtacaaatatattattaccagacaa |
3570767 |
T |
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| Q |
221 |
gacaatagatttaaaggtttctagagaaataataattgttattctgttggagtaacctcacgctgtctctgg-ttggttggtccaaaataatattacgac |
319 |
Q |
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| T |
3570766 |
gacaatagaattaaaggtttctagagaaataataattgttattctgttggagtaacctcacgctgtctctggtttggttggtccaaaataatattacgac |
3570667 |
T |
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| Q |
320 |
actaaacaattactactacagtatatatttgtacagtattgaaatgaatcaatgtcaaaactcaaacccattattataatggtaatctaatataaaccca |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3570666 |
actaaacaattactactacagtatatatttgtacagtattgaaatgtatcaatgtcaaaactcaaacccattattataatggtaatctaatataaaccca |
3570567 |
T |
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| Q |
420 |
cgagcctggcccaccaaccgaccatatgctaaggaatgcggatgagatacttctccttatacaatgtc |
487 |
Q |
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| T |
3570566 |
cgagcctggcccaccaaccgaccatatgctaaggaatgcggatgagatacttctccttatacaatgtc |
3570499 |
T |
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