View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1480_low_5 (Length: 473)

Name: NF1480_low_5
Description: NF1480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1480_low_5
NF1480_low_5
[»] chr7 (2 HSPs)
chr7 (89-459)||(44967753-44968123)
chr7 (9-45)||(33381577-33381613)
[»] chr4 (6 HSPs)
chr4 (342-398)||(14054447-14054503)
chr4 (218-318)||(13183607-13183706)
chr4 (9-46)||(42528597-42528634)
chr4 (9-45)||(6807426-6807462)
chr4 (9-45)||(49793088-49793124)
chr4 (9-45)||(56432515-56432551)
[»] chr1 (3 HSPs)
chr1 (342-433)||(21050900-21050990)
chr1 (9-45)||(17483730-17483766)
chr1 (347-387)||(21063161-21063201)
[»] chr2 (4 HSPs)
chr2 (9-52)||(12890212-12890255)
chr2 (9-43)||(21220989-21221023)
chr2 (9-42)||(18970733-18970766)
chr2 (9-49)||(11201676-11201716)
[»] chr3 (4 HSPs)
chr3 (9-49)||(24087339-24087379)
chr3 (9-46)||(42801517-42801554)
chr3 (9-49)||(1450507-1450547)
chr3 (9-45)||(36099228-36099264)
[»] chr5 (3 HSPs)
chr5 (9-50)||(20142263-20142304)
chr5 (9-42)||(21069637-21069670)
chr5 (9-45)||(8949809-8949845)
[»] scaffold0163 (1 HSPs)
scaffold0163 (9-45)||(1450-1486)
[»] scaffold0020 (1 HSPs)
scaffold0020 (9-45)||(164211-164247)
[»] chr8 (1 HSPs)
chr8 (9-49)||(44888673-44888713)
[»] chr6 (2 HSPs)
chr6 (9-45)||(16122518-16122554)
chr6 (9-45)||(34915547-34915583)


Alignment Details
Target: chr7 (Bit Score: 331; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 89 - 459
Target Start/End: Original strand, 44967753 - 44968123
Alignment:
Q  89 gttccgtgtctcgcttggaagaattctctctagtttattattcttctgtaatattgatgcttgtccatctcaatttgttcaatttcatggatggcatcat 188  Q
    |||| |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44967753 gttcagtgtctcgcttgcaagaattctctatagtttattattcttctgtaatattgatgcttgtccatctcaatttgttcaatttcatggatggcatcat 44967852  T
Q  189 ccttttttcccttcagttctgattttaggttgtcaaatttcctaatttttcattgtgttctccattgaagcctctacgaagattgctcagtttactcact 288  Q
    ||| ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44967853 cctattttcccttcaattctgattttagtttgtcaaatttcctaatttttcattgtgttctccattgaagcctctacgaagattgctcagtttactcact 44967952  T
Q  289 cttcctatcctactttcatttttctccaatactgcaaaaataaggaaaaagcacatacatcttcaattcattttcattgttttaagtttaatttattatg 388  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  44967953 cttcctatcctactttcatttttctccaatactgcaaaaataaggaaaaagtgcatacatcttcaattcattttcattgttttaagtttaatttattatg 44968052  T
Q  389 ctttttccccacttctctgtttaatctgcaaatctgagaaattataacagatctgtaattggagggagaag 459  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  44968053 ctttttcccctcttctctgtttaatctgcaaatctgagaaattataacagatctgtaattagagggagaag 44968123  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 9 - 45
Target Start/End: Original strand, 33381577 - 33381613
Alignment:
Q  9 caaaagggtcttataagtagggacagaggtagtattt 45  Q
    |||||||||||||||| ||||||| ||||||||||||    
T  33381577 caaaagggtcttataattagggacggaggtagtattt 33381613  T

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Target: chr4 (Bit Score: 49; Significance: 8e-19; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 342 - 398
Target Start/End: Complemental strand, 14054503 - 14054447
Alignment:
Q  342 catacatcttcaattcattttcattgttttaagtttaatttattatgctttttcccc 398  Q
    |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  14054503 catatatcttcaattcattttcatttttttaagtttaatttattatgctttttcccc 14054447  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 218 - 318
Target Start/End: Original strand, 13183607 - 13183706
Alignment:
Q  218 ttgtcaaatttcctaatttttcattgtgttctccattgaagcctctacgaagattgctcagtttactcactcttcctatcctactttcatttttctccaa 317  Q
    |||||||||||  ||||||| ||  |||||||||||||| || |||| ||| ||||| ||| || ||||||||||||| || | |||| |||||||||||    
T  13183607 ttgtcaaattttataatttt-caccgtgttctccattgatgcttctatgaatattgcacagcttcctcactcttcctaccccattttcgtttttctccaa 13183705  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 46
Target Start/End: Original strand, 42528597 - 42528634
Alignment:
Q  9 caaaagggtcttataagtagggacagaggtagtattta 46  Q
    |||||||||||||||| ||||||| |||||||||||||    
T  42528597 caaaagggtcttataactagggacggaggtagtattta 42528634  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 9 - 45
Target Start/End: Complemental strand, 6807462 - 6807426
Alignment:
Q  9 caaaagggtcttataagtagggacagaggtagtattt 45  Q
    |||||||||||||||| |||||||||||| |||||||    
T  6807462 caaaagggtcttataattagggacagagggagtattt 6807426  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 9 - 45
Target Start/End: Complemental strand, 49793124 - 49793088
Alignment:
Q  9 caaaagggtcttataagtagggacagaggtagtattt 45  Q
    |||||||||||||||| ||||||| ||||||||||||    
T  49793124 caaaagggtcttataattagggacggaggtagtattt 49793088  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 9 - 45
Target Start/End: Complemental strand, 56432551 - 56432515
Alignment:
Q  9 caaaagggtcttataagtagggacagaggtagtattt 45  Q
    |||||||||||||||| ||||||| ||||||||||||    
T  56432551 caaaagggtcttataattagggacggaggtagtattt 56432515  T

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Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 342 - 433
Target Start/End: Complemental strand, 21050990 - 21050900
Alignment:
Q  342 catacatcttcaattcattttcattgttttaagtttaatttattatgctttttccccacttctc--tgtttaatctgcaaatctgagaaattat 433  Q
    |||| ||||||||||||||||  ||||||||||||||||||||||   | ||||| |  |||||  ||||| ||||||||||||||||||||||    
T  21050990 catagatcttcaattcatttttcttgttttaagtttaatttatta---tctttccactattctctttgtttcatctgcaaatctgagaaattat 21050900  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 9 - 45
Target Start/End: Complemental strand, 17483766 - 17483730
Alignment:
Q  9 caaaagggtcttataagtagggacagaggtagtattt 45  Q
    |||||||||||||||| ||||||| ||||||||||||    
T  17483766 caaaagggtcttataattagggacggaggtagtattt 17483730  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 347 - 387
Target Start/End: Complemental strand, 21063201 - 21063161
Alignment:
Q  347 atcttcaattcattttcattgttttaagtttaatttattat 387  Q
    |||||||||| |||||  |||||||||||||||||||||||    
T  21063201 atcttcaattaatttttcttgttttaagtttaatttattat 21063161  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 9 - 52
Target Start/End: Original strand, 12890212 - 12890255
Alignment:
Q  9 caaaagggtcttataagtagggacagaggtagtatttaataaga 52  Q
    |||||||||||||||| ||||||| |||||||||||||||||||    
T  12890212 caaaagggtcttataattagggacggaggtagtatttaataaga 12890255  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 9 - 43
Target Start/End: Original strand, 21220989 - 21221023
Alignment:
Q  9 caaaagggtcttataagtagggacagaggtagtat 43  Q
    |||||||||||||||| ||||||||||||||||||    
T  21220989 caaaagggtcttataaatagggacagaggtagtat 21221023  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 42
Target Start/End: Original strand, 18970733 - 18970766
Alignment:
Q  9 caaaagggtcttataagtagggacagaggtagta 42  Q
    |||||||||||||||| |||||||||||||||||    
T  18970733 caaaagggtcttataattagggacagaggtagta 18970766  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 11201716 - 11201676
Alignment:
Q  9 caaaagggtcttataagtagggacagaggtagtatttaata 49  Q
    |||||||||||||||| ||||||| |||| |||||||||||    
T  11201716 caaaagggtcttataattagggacggagggagtatttaata 11201676  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 9 - 49
Target Start/End: Original strand, 24087339 - 24087379
Alignment:
Q  9 caaaagggtcttataagtagggacagaggtagtatttaata 49  Q
    |||||||||||||||| ||||||| ||||||||||||||||    
T  24087339 caaaagggtcttataattagggacggaggtagtatttaata 24087379  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 46
Target Start/End: Complemental strand, 42801554 - 42801517
Alignment:
Q  9 caaaagggtcttataagtagggacagaggtagtattta 46  Q
    |||||||||||||||| ||||||| |||||||||||||    
T  42801554 caaaagggtcttataattagggacggaggtagtattta 42801517  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 9 - 49
Target Start/End: Original strand, 1450507 - 1450547
Alignment:
Q  9 caaaagggtcttataagtagggacagaggtagtatttaata 49  Q
    |||||||||||||||| |||||||||| ||||||| |||||    
T  1450507 caaaagggtcttataattagggacagatgtagtatgtaata 1450547  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 9 - 45
Target Start/End: Original strand, 36099228 - 36099264
Alignment:
Q  9 caaaagggtcttataagtagggacagaggtagtattt 45  Q
    |||||||||||||||| |||||||||||| |||||||    
T  36099228 caaaagggtcttataattagggacagagggagtattt 36099264  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 50
Target Start/End: Original strand, 20142263 - 20142304
Alignment:
Q  9 caaaagggtcttataagtagggacagaggtagtatttaataa 50  Q
    |||||||||||||||| ||||||| |||||||||| ||||||    
T  20142263 caaaagggtcttataattagggacggaggtagtatctaataa 20142304  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 42
Target Start/End: Complemental strand, 21069670 - 21069637
Alignment:
Q  9 caaaagggtcttataagtagggacagaggtagta 42  Q
    |||||||||||||||| |||||||||||||||||    
T  21069670 caaaagggtcttataattagggacagaggtagta 21069637  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 9 - 45
Target Start/End: Complemental strand, 8949845 - 8949809
Alignment:
Q  9 caaaagggtcttataagtagggacagaggtagtattt 45  Q
    |||||||||||||||| ||||||| ||||||||||||    
T  8949845 caaaagggtcttataattagggacggaggtagtattt 8949809  T

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Target: scaffold0163 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0163
Description:

Target: scaffold0163; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 9 - 45
Target Start/End: Original strand, 1450 - 1486
Alignment:
Q  9 caaaagggtcttataagtagggacagaggtagtattt 45  Q
    |||||||||||||||| ||||||| ||||||||||||    
T  1450 caaaagggtcttataattagggacggaggtagtattt 1486  T

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Target: scaffold0020 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 9 - 45
Target Start/End: Complemental strand, 164247 - 164211
Alignment:
Q  9 caaaagggtcttataagtagggacagaggtagtattt 45  Q
    |||||||||||||||| ||||||| ||||||||||||    
T  164247 caaaagggtcttataattagggacggaggtagtattt 164211  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 44888713 - 44888673
Alignment:
Q  9 caaaagggtcttataagtagggacagaggtagtatttaata 49  Q
    |||||||||||||||| ||||||| ||||||||| ||||||    
T  44888713 caaaagggtcttataattagggacggaggtagtagttaata 44888673  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 9 - 45
Target Start/End: Original strand, 16122518 - 16122554
Alignment:
Q  9 caaaagggtcttataagtagggacagaggtagtattt 45  Q
    |||||||||||||||| ||||||| ||||||||||||    
T  16122518 caaaagggtcttataattagggacggaggtagtattt 16122554  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 9 - 45
Target Start/End: Original strand, 34915547 - 34915583
Alignment:
Q  9 caaaagggtcttataagtagggacagaggtagtattt 45  Q
    |||||||||||||||| ||||||| ||||||||||||    
T  34915547 caaaagggtcttataattagggacggaggtagtattt 34915583  T

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