View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1480_low_6 (Length: 457)
Name: NF1480_low_6
Description: NF1480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1480_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 8 - 227
Target Start/End: Complemental strand, 15507106 - 15506887
Alignment:
| Q |
8 |
tgagatgaactaacaagtggaaataagaacaaaacaagacatgcctgaaagaggcaagaaatgaactttgtttgctggatttccatcatgtctttcatat |
107 |
Q |
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| T |
15507106 |
tgagatgaactaacaagtggaaataagaacaaaacaagacatgcttgaaagaggaatgaaatgaactttgtttgctggattcccatcatgtctttcatat |
15507007 |
T |
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| Q |
108 |
gatctttggtcaactcaatctccaattaatactagtggagatttaaggctgcaatactagagcatttcaagtattgaatgtgcctcccataaagtactct |
207 |
Q |
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| T |
15507006 |
gatctttggtcaactcaatctccaattaatactggtggagatttaaggctgcaacactagagcatttcaagtattgaatgtgcctcccataaagtactct |
15506907 |
T |
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| Q |
208 |
tcaaggggcttatcattttg |
227 |
Q |
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| T |
15506906 |
tcaaggggcttatcattttg |
15506887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 251 - 440
Target Start/End: Complemental strand, 15506861 - 15506672
Alignment:
| Q |
251 |
tgttatatcagtgtgtgagagggttgtactatgaagtgagcactcttatctttattgtcagagagagcaactaaatagttgtcacaagttcaagaaagta |
350 |
Q |
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| T |
15506861 |
tgttatatcagtgtgtgagagggttgtactatgaagtgagcactcttatctttattgtcagagagagcaactaaatagttgtcacaagttcaagaaagta |
15506762 |
T |
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| Q |
351 |
tgagatcaatgtgaggtaagagtaagctcatgagagagtttatttacccttcctagtcctaaagacaaatatttcagcttagaattatgt |
440 |
Q |
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| T |
15506761 |
tgagatcaatatgaggtaagagtaagctcatgagagagtttatttaccctttcaagtcctatggacaaatatttcagcttagaattatgt |
15506672 |
T |
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