View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1480_low_9 (Length: 410)
Name: NF1480_low_9
Description: NF1480
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1480_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 18 - 243
Target Start/End: Original strand, 19072282 - 19072507
Alignment:
| Q |
18 |
catgggactcagaatacagacatgagtgacttttgaagagtcattattaaaatcaaaactttaagcatttactgacttgggcatcggagcgtgtgccagc |
117 |
Q |
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| T |
19072282 |
catgggactcagaatacagacatgagtgacttttgaagagtcagtattaaaatcaaaactttaagcatttactgacttgggcatcagagcgtgtgccagc |
19072381 |
T |
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| Q |
118 |
tttgcaggtaccgccatacttggctatggatgcaatcctaaatctcacctgagttcttcctctgctgtaccggtccatcgtagcatgagcaccaccaatg |
217 |
Q |
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| T |
19072382 |
tttgcaggtaccgccatacttggctatggaagcaatcctaaatctcacctgagttcttcctctgctgtaccggtccatcgtagcatgagcaccaccaatg |
19072481 |
T |
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| Q |
218 |
tctcattcataagctctactcctaga |
243 |
Q |
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| T |
19072482 |
tctcattcataagctctactcctaga |
19072507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 272 - 399
Target Start/End: Original strand, 19072508 - 19072634
Alignment:
| Q |
272 |
agaaactatgagattctaatatttagaagcattnnnnnnnnttcataataattctgactttctcttttattcggtttcaccannnnnnnnagtcatcgtc |
371 |
Q |
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| T |
19072508 |
agaaactatgagattctaatatttagaagcattaaaaaaaattcataataattctgactttctcttttattcggtttcacca-tttttttagtcatcgtc |
19072606 |
T |
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| Q |
372 |
catcaaataatgttcagatacacttcat |
399 |
Q |
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| T |
19072607 |
catcaaataatgttcagatacacttcat |
19072634 |
T |
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