View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14810_low_1 (Length: 465)
Name: NF14810_low_1
Description: NF14810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14810_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 166; Significance: 1e-88; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 18 - 209
Target Start/End: Complemental strand, 48191608 - 48191415
Alignment:
| Q |
18 |
tcaacaactcacattggagtgacaggaa-tagatgttccattaaagacatcaagtgtgtttttaaa-gccaacaaagaaagaataaaaataatgaaagat |
115 |
Q |
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| T |
48191608 |
tcaacaactcacattggagtgacaggaactggatgttccattaaagacatcaagtgtgtttttaaaagccaacaaagaaagaataaaaataatgaaagat |
48191509 |
T |
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| Q |
116 |
taattttggaattgatagtctggataaattgattacaaatgaacttcataccgtgatcctaaggtaattaatataatcaagttcttttaaaaaa |
209 |
Q |
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| T |
48191508 |
taattttggaattgatagtctggataaattgattacaaatgaacttcataccgtgatcctaaggtaattaatataatcaagttctctaaaaaaa |
48191415 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 332 - 447
Target Start/End: Complemental strand, 48190730 - 48190614
Alignment:
| Q |
332 |
taagggtatatattaaggtattttaatatatgcc-ttgatatataccgggaatgaagtttgaactctggacactctacttcttcaccttaaaaaagtgaa |
430 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48190730 |
taagggtatatattaaggtattttaatatatgcccttgatatataccgggaatgaagtttgaactctggacactctacttcttcaccttaaaaaagtgaa |
48190631 |
T |
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| Q |
431 |
tttttaggcattaagct |
447 |
Q |
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| T |
48190630 |
tttttaggcattaagct |
48190614 |
T |
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