View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14810_low_5 (Length: 237)

Name: NF14810_low_5
Description: NF14810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14810_low_5
NF14810_low_5
[»] chr1 (3 HSPs)
chr1 (12-90)||(5390479-5390557)
chr1 (157-219)||(5390629-5390691)
chr1 (20-86)||(5394051-5394118)


Alignment Details
Target: chr1 (Bit Score: 75; Significance: 1e-34; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 12 - 90
Target Start/End: Original strand, 5390479 - 5390557
Alignment:
Q  12 gagcagagatgtaaagaagttaagagaattaagaaatagtgaaagttagaaaattaccaacaagtgaacattattcttt 90  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5390479 gagcagaggtgtaaagaagttaagagaattaagaaatagtgaaagttagaaaattaccaacaagtgaacattattcttt 5390557  T

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Target: chr1; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 157 - 219
Target Start/End: Original strand, 5390629 - 5390691
Alignment:
Q  157 ttgttcttcccaccccaccaggcgaactttatttcaaacaatccagagctcagatcatcatgg 219  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  5390629 ttgttcttcccaccccaccaggggaactttatttcaaacaatccagagctcagatcatcatgg 5390691  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 20 - 86
Target Start/End: Original strand, 5394051 - 5394118
Alignment:
Q  20 atgtaaagaagttaagagaattaagaaatagtgaaagttagaaaattacc-aacaagtgaacattatt 86  Q
    |||| |||||||||||||||||||||||||| ||||||  ||| |||||| |||||||||||||||||    
T  5394051 atgtgaagaagttaagagaattaagaaatagcgaaagtgtgaacattaccaaacaagtgaacattatt 5394118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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