View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14811_high_1 (Length: 430)
Name: NF14811_high_1
Description: NF14811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14811_high_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 17 - 417
Target Start/End: Complemental strand, 33530089 - 33529699
Alignment:
| Q |
17 |
tgaaatcaagcaccgatctgaaatcttaaatagttgaaaaagtgggtgtgtttgagaatctgagaataagggttggtgggtgttgaaggaaataagaaaa |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33530089 |
tgaaatcaagcaccgatctgaaatcttaaatagttgaaaaagcgggtgtgtttgagaatctgagaataagggttggtgggtgttgaaggaaataagaaaa |
33529990 |
T |
|
| Q |
117 |
aggttagggttttgtgaagtgtgtttaatttatgaatgaatgggacattttcatgtgtgtgnnnnnnnctgtgatcaaattttgaggatgtttgagaagg |
216 |
Q |
| |
|
||| ||||||||||| |||||||||||||||||||||| ||||| |||||||||| | |||||||||||||||||||||||||||||||| |
|
|
| T |
33529989 |
aggatagggttttgtaaagtgtgtttaatttatgaatg----ggacaatttcatgtgttt----ttttctgtgatcaaattttgaggatgtttgagaagg |
33529898 |
T |
|
| Q |
217 |
tatatttcttgtctttgaagtagtttacacgtggcactatgataatgaaccatgtcagcagatgtttatgttagtgttttgaaacttttgcaccaccatt |
316 |
Q |
| |
|
||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
33529897 |
tatatttcttgtcattgaagttgtttacacgtggcactatgataatgaaccatgtcagcagatgtttatgttagtgttttgaatcttttgcaccaccatt |
33529798 |
T |
|
| Q |
317 |
gaagatttgaagcttgctttttggtgacaccactacttatccctcatcttgatgttgtctgtctctcacactcataagcactttctttttagatcaattt |
416 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| || | | |||||| ||||||||||||||||||||||||| |
|
|
| T |
33529797 |
gaagatttgaagcttgctttttggtgacaccactacttatccctcatgttgacgttgtc--tcacactcactcacaagcactttctttttagatcaattt |
33529700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University